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Quantitative measurements and controlled designs of firefly bioluminescence with genetic bio-technology

Research Project

Project/Area Number 26610081
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Condensed matter physics I
Research InstitutionThe University of Tokyo

Principal Investigator

AKIYAMA HIDEFUMI  東京大学, 物性研究所, 准教授 (40251491)

Co-Investigator(Kenkyū-buntansha) HIYAMA Miyabi  東京大学, 物性研究所, 研究員 (90399311)
Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords生物発光 / 酵素 / ルシフェラーゼ / ルシフェリン / 分光
Outline of Final Research Achievements

We studied quantum yields, spectra, and their dependences on temperatures and solvents, on luciferin-luciferase reactions in firefly bioluminescence, by using biosynthetic mutant luciferase enzyme, where charges, polarity, and hydrophobicity/ hydrophilicity of amino acid residues surrounding oxyluciferin are modified. We also measured quantum yields of biosynthetic mutant photo-protein (aequorin) in jellyfish bioluminescence, by revising our quantitative spectrometer to cover 400 nm blue region. Theoretical analyses via time-dependent density-functional calculations, first-principle calculations, and molecular dynamics calculations including water and protein molecules were made.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (44 results)

All 2016 2015 2014

All Journal Article (14 results) (of which Peer Reviewed: 12 results,  Acknowledgement Compliant: 5 results) Presentation (30 results) (of which Invited: 7 results)

  • [Journal Article] Calibration standards and measurement accuracy of absolute electroluminescence and internal properties in multi-junction and arrayed solar cells2016

    • Author(s)
      Masahiro Yoshita, Lin Zhu, Changsu Kim, Toshimitsu Mochizuki, Tetsuya Nakamura, Mitsuru Imaizumi, Shaoqiang Chen, Hidehiro Kubota, Yoshihiko Kanemitsu, and Hidefumi Akiyama
    • Journal Title

      in Proc. of SPIE Photonics West

      Volume: 9743 Pages: 97430D-97430D

    • DOI

      10.1117/12.2211726

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Absolute Electroluminescence Imaging of Multi-Junction Solar Cells and Calibration Standards2015

    • Author(s)
      Masahiro Yoshita, Lin Zhu, Changsu Kim, Hidefumi Akiyama, Shaoqiang Chen, Toshimitsu Mochizuki, Hidehiro Kubota, Tetsuya Nakamura, Mitsuru Imaizumi, Yoshihiko Kanemitsu
    • Journal Title

      The 42nd IEEE Photovoltaic Specialists Conference Proceedings

      Volume: 7356199 Pages: 1-4

    • DOI

      10.1109/pvsc.2015.7356199

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Effect of very High magnetic field on the optical properties of firefly light emitter oxyluciferin2015

    • Author(s)
      Weihang Zhou, Daisuke Nakamura, Yu Wang, Toshimitsu Mochizuki, Hidefumi Akiyama, Shojiro Takeyama
    • Journal Title

      Journal of Luminescence

      Volume: 165 Pages: 15-18

    • DOI

      10.1016/j.jlumin.2015.04.009

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] On the importance of cavity-length and heat dissipation in GaN-based vertical-cavity surface-emitting lasers2015

    • Author(s)
      W. J. Liu, X. L. Hu, L. Y. Ying, S. Q. Chen, J. Y. Zhang, H. Akiyama, Z. P. Cai, B. P. Zhang
    • Journal Title

      Scientific Reports 5

      Volume: 5 Issue: 1 Pages: 9600-9600

    • DOI

      10.1038/srep09600

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Vibronic structures in absorption and fluorescence spectra of firefly oxyluciferin in aqueous solutions2015

    • Author(s)
      Miyabi Hiyama, Yoshifumi Noguchi, Hidefumi Akiyama, Kenta Yamada, Nobuaki Koga
    • Journal Title

      Photochemistry and Photobiology

      Volume: 91 Issue: 4 Pages: 819-827

    • DOI

      10.1111/php.12463

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] First-Principles Investigation of Strong Excitonic Effects in Oxygen 1s X-Ray Absorption Spectra2015

    • Author(s)
      Y. Noguchi, M. Hiyama, H. Akiyama, Y. Harada, and N. Koga
    • Journal Title

      J. Chem. Theor. Compt.

      Volume: 11 Issue: 4 Pages: 1668-1673

    • DOI

      10.1021/acs.jctc.5b00082

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Analysis of Oxyluciferin Photoluminescence Pathways in Aqueous Solutions2015

    • Author(s)
      Miyabi Hiyama, Toshimitsu Mochizuki, Hidefumi Akiyama, Nobuaki Koga
    • Journal Title

      Photochemistry and Photobiology

      Volume: 91 Issue: 1 Pages: 74-83

    • DOI

      10.1111/php.12370

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] ホタル生物発光と物理2014

    • Author(s)
      秋山英文,望月敏光,樋山みやび
    • Journal Title

      日本物理学会誌

      Volume: 69 Pages: 218-218

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] First-Principles Investigation on Rydberg and Resonance Excitations: A Case Study of the Firefly Luciferin Anion2014

    • Author(s)
      Y. Noguchi, M. Hiyama, H. Akiyama, and N. Koga
    • Journal Title

      J. Chem. Phys.

      Volume: 141 Issue: 4 Pages: 044309-044309

    • DOI

      10.1063/1.4890730

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] How can quantitative bioluminescence and in-situ fluorescence of firefly oxyluciferin in luciferase be compared with theoretical calculations2014

    • Author(s)
      Hidefumi Akiyama, Yu Wang, Miyabi Hiyama, Toshimitsu Mochizuki, Kanako Terakado, Toru Nakatsu
    • Journal Title

      Luminescence

      Volume: 29 Pages: 7-8

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] First-Principles Investigation on Optical Properties of Firefly Luciferin Anion2014

    • Author(s)
      Yoshifumi Noguchi, Miyabi Hiyama, Hidefumi Akiyama, Nobuaki Koga
    • Journal Title

      Luminescence

      Volume: 29 Pages: 86-87

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Theoretical study of pH dependence on photoluminescence of firefly luciferin2014

    • Author(s)
      Miyabi Hiyama, Kenta Yamada, Toshimitsu Mochizuki, Hidefumi Akiyama, Nobuaki Koga
    • Journal Title

      Luminescence

      Volume: 29 Pages: 70-70

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Temperature-Sensitive Quantum Yields and Quantitative Spectra of Firefly Bioluminescence2014

    • Author(s)
      Toshimitsu Mochizuki, Yu Wang, Miyabi Hiyama, Hidefumi Akiyama
    • Journal Title

      Applied Physics Letters

      Volume: 104 Issue: 21 Pages: 213704-213704

    • DOI

      10.1063/1.4880578

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Analysis of Photoexcitation Energy Dependence in the Photo Luminescence of Firefly Luciferin2014

    • Author(s)
      Miyabi Hiyama, Hidefumi Akiyama, Toshimitsu Mochizuki, Kenta Yamada, and Nobuaki Koga
    • Journal Title

      Photochem. Photobiol

      Volume: 90 Issue: 4 Pages: 820-828

    • DOI

      10.1111/php.12243

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] Stability of keto-, enol-, enolate-type oxyluciferin anions in aqueous solutions2016

    • Author(s)
      Yoshifumi Noguchi, Miyabi Hiyama, Motoyuki Shiga, Osamu Sugino, Hidefumi Akiyama
    • Organizer
      19th International Symposium on Bioluminescence and Chemiluminescence 2016
    • Place of Presentation
      Tsukuba, Japan
    • Year and Date
      2016-05-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] Effects of vibronic transitions and water solvation on absorption and fluorescence spectra of firefly oxyluciferin2016

    • Author(s)
      Miyabi Hiyama, Yoshifumi Noguchi, Kenta Yamada, Hidefumi Akiyama, Nobuaki Koga
    • Organizer
      19th International Symposium on Bioluminescence and Chemiluminescence 2016
    • Place of Presentation
      Tsukuba, Japan
    • Year and Date
      2016-05-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] 太陽電池の絶対エレクトロルミネッセンス画像計測法と応用2016

    • Author(s)
      秋山 英文
    • Organizer
      第63回応用物理学会春季学術講演会
    • Place of Presentation
      東工大大岡山キャンパス(東京都目黒区大岡山)
    • Year and Date
      2016-03-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] 多接合太陽電池エレクトロルミネッセンス定量計測の測定精度評価2016

    • Author(s)
      吉田 正裕、朱 琳、金 昌秀、久保田 英博、中村 徹哉、今泉 充、金光 義彦、秋山 英文
    • Organizer
      第63回応用物理学会春季学術講演会
    • Place of Presentation
      東工大大岡山キャンパス(東京都目黒区大岡山)
    • Year and Date
      2016-03-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] Calibration standards and measurement accuracy of absolute electroluminescence and internal properties in multi-junction and arrayed solar cells2016

    • Author(s)
      Masahiro Yoshita, Lin Zhu, Changsu Kim, Toshimitsu Mochizuki, Tetsuya Nakamura, Mitsuru Imaizumi, Shaoqiang Chen, Hidehiro Kubota, Yoshihiko Kanemitsu, and Hidefumi Akiyama
    • Organizer
      SPIE Photonics West San Francisco
    • Place of Presentation
      San Francisco, USA
    • Year and Date
      2016-02-13
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] "ll-electron first-principles X-ray adsorption spectra calculations for acetone and acetic acid2015

    • Author(s)
      Yoshifumi Noguchi, Miyabi Hiyama, Hidefumi Akiyama, Yoshihisa Harada, Nobuaki Koga
    • Organizer
      THE INTERNATIONAL CHEMICAL CONGRESS OF PACIFIC BASIN SOCIETIES
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Theoretical study for photoluminescence of firefly-bioluminescence-related molecules2015

    • Author(s)
      Miyabi Hiyama, Yoshifumi Noguchi, Toshimitsu Mochizuki, Kenta Yamada, Hidefumi Akiyama, Nobuaki Koga
    • Organizer
      THE INTERNATIONAL CHEMICAL CONGRESS OF PACIFIC BASIN SOCIETIES
    • Place of Presentation
      Honolulu, Hawaii, USA,
    • Year and Date
      2015-12-16
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Theoretical study for photoluminescence of firefly-bioluminescence-related molecules2015

    • Author(s)
      Miyabi Hiyama, Yoshifumi Noguchi, Toshimitsu Michizuki, Kenta Yamada, Hidefumi Akiyama, Nobuaki Koga
    • Organizer
      THE INTERNATIONAL CHEMICAL CONGRESS OF PACIFIC BASIN SOCIETIES
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-16
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] ホタル生物発光の量子化学計算と反応機構2015

    • Author(s)
      樋山みやび
    • Organizer
      量子化学探索研究所講演会
    • Place of Presentation
      東京大学 本郷キャンパス (東京都文京区本郷)
    • Year and Date
      2015-11-29
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 物発光における量子化学計算2015

    • Author(s)
      樋山みやび
    • Organizer
      第3回津田沼RBKフォーラム
    • Place of Presentation
      千葉工業大学 (千葉県習志野市津田沼)
    • Year and Date
      2015-11-28
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 量子化学計算によるホタル生物発光関連分子の理論的研究2015

    • Author(s)
      樋山みやび
    • Organizer
      談話会
    • Place of Presentation
      日本大学理工学部 (東京都千代田区 神田駿河台)
    • Year and Date
      2015-11-05
    • Related Report
      2015 Annual Research Report
  • [Presentation] 生物発光における分子科学2015

    • Author(s)
      樋山みやび
    • Organizer
      原子衝突学会第40回年会
    • Place of Presentation
      首都大学東京南大沢キャンパス国際交流会館( 東京都八王子市 南大沢)
    • Year and Date
      2015-09-28
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] イクオリン生物発光の量子収率測定2015

    • Author(s)
      挾間優治, 東暉舜, 倉田麻貴, 樋山みやび, 吉田正裕, 久保田英博, 井上敏, 秋山英文
    • Organizer
      日本物理学会2015年秋季大会
    • Place of Presentation
      関西大学 千里山キャンパス(大阪府吹田市山手町)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 生物発光の光制御に向けたケージド・ルシフェリンの分光評価2015

    • Author(s)
      倉田麻貴, 樋山みやび, 挟間優治, 東暉舜, 吉田正裕, 望月敏光, 秋山英文
    • Organizer
      第9回分子科学討論会
    • Place of Presentation
      東京工業大学(東京都目黒区大岡山)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 水溶液中オキシルシフェリンの吸収・蛍光スペクトルにおける振電構造の解析2015

    • Author(s)
      樋山みやび, 野口良史, 秋山英文, 山田健太, 古賀伸明
    • Organizer
      第9回分子科学討論会
    • Place of Presentation
      東京工業大学(東京都目黒区大岡山)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] Analysis of Photoluminescence Pathways of Firefly Oxyluciferin in Aqueous Solution"2015

    • Author(s)
      Miyabi Hiyama, Toshimitsu Mochizuki, Hidefumi Akiyama, Nobuaki Koga
    • Organizer
      日本生物物理学会第53回年会
    • Place of Presentation
      金沢大学 角間キャンパス(石川県金沢市角間町)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] オキシルシフェリン光ルミネッセンスにおける発光反応経路と振動構造2015

    • Author(s)
      樋山みやび、野口良史、望月敏光、秋山英文、古賀伸明
    • Organizer
      物性研究所短期研究会 機能物性融合科学研究会シリーズ(3)
    • Place of Presentation
      東京大学物性研究所(千葉県柏市柏の葉)
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] ルミノール化学発光の量子収率測定と触媒依存性2015

    • Author(s)
      村岡洋祐,望月敏光,樋山みやび,吉田正裕,秋山英文
    • Organizer
      日本物理学会第70回年次大会
    • Place of Presentation
      早稲田大学(東京都新宿区)
    • Year and Date
      2015-03-21 – 2015-03-24
    • Related Report
      2014 Research-status Report
  • [Presentation] ホタル生物発光関連分子における分光的性質についての理論研究2014

    • Author(s)
      樋山みやび、野口良史、望月敏光、山田健太、秋山英文、古賀伸明
    • Organizer
      短期研究会 機能物性融合科学研究会シリーズ(1)「光機能」
    • Place of Presentation
      東京大学物性研究所(千葉県柏市)
    • Year and Date
      2014-12-04 – 2014-12-05
    • Related Report
      2014 Research-status Report
  • [Presentation] ケージド・ルシフェリンの吸収・生物発光と溶媒依存性2014

    • Author(s)
      倉田麻貴、望月敏光、樋山みやび、秋山英文
    • Organizer
      短期研究会 機能物性融合科学研究会シリーズ(1)「光機能」
    • Place of Presentation
      東京大学物性研究所(千葉県柏市)
    • Year and Date
      2014-12-04 – 2014-12-05
    • Related Report
      2014 Research-status Report
  • [Presentation] 生物発光と原子分子2014

    • Author(s)
      樋山みやび
    • Organizer
      京都大学量子理工学教育研究センター 第15回公開シンポジウム
    • Place of Presentation
      京都大学(京都府京都市)
    • Year and Date
      2014-10-24
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Theoretical Analysis of Absorption Spectra of Oxyluciferin in Aqueous Solutions2014

    • Author(s)
      Miyabi Hiyama, Hidefumi Akiyama, Nobuaki Koga
    • Organizer
      日本生物物理学会第52回年会
    • Place of Presentation
      札幌コンベンションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Research-status Report
  • [Presentation] ホタル生物発光関連分子の光ルミネッセンスの理論的研究2014

    • Author(s)
      樋山みやび, 秋山英文, 古賀伸明
    • Organizer
      第8回分子科学討論会
    • Place of Presentation
      広島大学(広島県東広島市)
    • Year and Date
      2014-09-21 – 2014-09-24
    • Related Report
      2014 Research-status Report
  • [Presentation] How can quantitative bioluminescence and in-situ fluorescence of firefly oxyluciferin in luciferase be compared with theoretical calculations ?2014

    • Author(s)
      Hidefumi Akiyama, Yu Wang, Miyabi Hiyama, Toshimitsu Mochizuki, Kanako Terakado, Toru Nakatsu
    • Organizer
      18th International Symposium on Bioluminescence and Chemiluminescence
    • Place of Presentation
      Uppsala Universitet, Uppsala, Sweden
    • Year and Date
      2014-06-23 – 2014-06-28
    • Related Report
      2014 Research-status Report
  • [Presentation] First-Principles Investigation on Optical Properties of Firefly Luciferin Anion2014

    • Author(s)
      Yoshifumi Noguchi, Miyabi Hiyama, Hidefumi Akiyama, Nobuaki Koga
    • Organizer
      18th International Symposium on Bioluminescence and Chemiluminescence
    • Place of Presentation
      Uppsala Universitet, Uppsala, Sweden
    • Year and Date
      2014-06-23 – 2014-06-28
    • Related Report
      2014 Research-status Report
  • [Presentation] Theoretical study of pH dependence on photoluminescence of firefly luciferin2014

    • Author(s)
      Miyabi Hiyama, Kenta Yamada, Toshimitsu Mochizuki, Hidefumi Akiyama, Nobuaki Koga
    • Organizer
      18th International Symposium on Bioluminescence and Chemiluminescence
    • Place of Presentation
      Uppsala Universitet, Uppsala, Sweden
    • Year and Date
      2014-06-23 – 2014-06-28
    • Related Report
      2014 Research-status Report
  • [Presentation] All-electron first-principles calculations for XAS of acetone and acetic acid2014

    • Author(s)
      Yoshifumi Noguchi, Miyabi Hiyama, Hidefumi Akiyama, Yoshihisa Harada, Nobuaki Koga
    • Organizer
      30th Symposium on Chemical Kinetics and Dynamics
    • Place of Presentation
      兵庫大学(兵庫県加古川市)
    • Year and Date
      2014-06-04 – 2014-06-06
    • Related Report
      2014 Research-status Report
  • [Presentation] Theoretical study for excited states of firefly-bioluminescence-related molecules2014

    • Author(s)
      Miyabi Hiyama, Hidefumi Akiyama, Nobuaki Koga
    • Organizer
      30th Symposium on Chemical Kinetics and Dynamics
    • Place of Presentation
      兵庫大学(兵庫県加古川市)
    • Year and Date
      2014-06-04 – 2014-06-06
    • Related Report
      2014 Research-status Report
  • [Presentation] アセトンと酢酸のX 線吸収スペクトルの第一原理計算2014

    • Author(s)
      野口 良史、樋山 みやび、秋山 英文、原田 慈久、古賀 伸明
    • Organizer
      第17回理論化学討論会
    • Place of Presentation
      名古屋大学(愛知県名古屋市)
    • Year and Date
      2014-05-22 – 2014-05-24
    • Related Report
      2014 Research-status Report
  • [Presentation] 励起状態のpKaを利用した酸性条件下でのホタルルシフェリン蛍光スペクトルの解析2014

    • Author(s)
      樋山みやび, 秋山英文, 古賀伸明
    • Organizer
      第17回理論化学討論会
    • Place of Presentation
      名古屋大学(愛知県名古屋市)
    • Year and Date
      2014-05-22 – 2014-05-24
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2020-05-15  

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