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Regulating genetic codes by high pressure

Research Project

Project/Area Number 26620138
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Bio-related chemistry
Research InstitutionKonan University

Principal Investigator

Sugimoto Naoki  甲南大学, 先端生命工学研究所, 教授 (60206430)

Co-Investigator(Kenkyū-buntansha) Shuntaro Takahashi  甲南大学, 先端生命工学研究所, 講師 (40456257)
Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2014: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords核酸 / RNA / DNA / 熱力学的安定性 / 高圧力 / 遺伝暗号
Outline of Final Research Achievements

In this study, we used high pressure and investigated to regulate gene expression by changing the stability of non-canonical structure of nucleic acids selectively. As a result, the non-canonical structures such as G-quadruplex was largely destabilized with increasing pressure. By using this property, we found that gene expression from the DNA including non-canonical nucleic acids structure could be regulated by tuning pressure. These results shed light on the development of novel system of gene expression by using pressure changes and the elucidation of the origin of life, which was possibly born under a high pressure condition.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (46 results)

All 2016 2015 2014 Other

All Int'l Joint Research (1 results) Journal Article (10 results) (of which Peer Reviewed: 10 results,  Acknowledgement Compliant: 7 results,  Open Access: 6 results) Presentation (32 results) (of which Int'l Joint Research: 7 results,  Invited: 11 results) Book (2 results) Remarks (1 results)

  • [Int'l Joint Research] スロベニア国立NMRセンター(スロベニア)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Real-time monitoring of G‑quadruplex formation during transcription2016

    • Author(s)
      T. Endoh, A. B. Rode, S. Takahashi, Y. Kataoka, M. Kuwahara, and N. Sugimoto
    • Journal Title

      Anal. Chem.

      Volume: 88 Issue: 4 Pages: 1984-1989

    • DOI

      10.1021/acs.analchem.5b04396

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Pressure-dependent formation of i-motif and G-quadruplex DNA structures2015

    • Author(s)
      S. Takahashi, N. Sugimoto
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 17 Issue: 46 Pages: 31004-31010

    • DOI

      10.1039/c5cp04727g

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structural foundation for DNA behavior in hydrated ionic liquid: An NMR study2015

    • Author(s)
      M. Marusic, H. Tateishi-Karimata, N. Sugimoto, and J. Plavec
    • Journal Title

      Biochimie

      Volume: 108 Pages: 169-177

    • DOI

      10.1016/j.biochi.2014.11.015

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Thermodynamic Properties of Water Molecules in the Presence of Cosolute Depend on DNA Structure: A Study Using Grid Inhomogeneous Solvation Theory2015

    • Author(s)
      M. Nakano, H. Tateishi-Karimata, S. Tanaka, F. Tama, O. Miyashita, S. Nakano, N. Sugimoto
    • Journal Title

      Nucl. Acids Res.

      Volume: 43 Pages: 10114-10125

    • DOI

      10.1093/nar/gkv1133

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] i-Motifs Are More Stable than G-Quadruplexes in a Hydrated Ionic Liquid2015

    • Author(s)
      H. Tateishi-Karimata, M. Nakano, S. Pramanik, S. Tanaka, N. Sugimoto
    • Journal Title

      Chem. Commun.

      Volume: 51 Issue: 32 Pages: 6909-6912

    • DOI

      10.1039/c5cc00666j

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tuning riboswitch-mediated gene regulation by rational control of aptamer ligand binding properties2015

    • Author(s)
      A. B. Rode, T. Endoh, and N. Sugimoto
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 54 Issue: 3 Pages: 905-909

    • DOI

      10.1002/anie.201407385

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 核酸構造の熱力学的安定性に及ぼす分子環境と高圧力の効果2015

    • Author(s)
      高橋俊太郎, 杉本直己
    • Journal Title

      高圧力の科学と技術

      Volume: 25

    • NAID

      130005075752

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] New insights into transcription fidelity : thermal stability of non-cononical structures in template DNA regulates transcriptional arrest, pause, and slippage2014

    • Author(s)
      H. Tateishi-Karimata, N. Isono, and N. Sugimoto
    • Journal Title

      PLoS ONE

      Volume: 9 Issue: 3 Pages: e90580-e90580

    • DOI

      10.1371/journal.pone.0090580

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] The affinity of molecular ions for DNA structures is determined by solvent accessible surface area2014

    • Author(s)
      M. Nakano, H. Tateishi-Karimata, S. Tanaka, and N. Sugimoto
    • Journal Title

      J. Phys. Chem. B

      Volume: 118 Issue: 32 Pages: 9583-9594

    • DOI

      10.1021/jp505107g

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Organelle-mimicking liposome dissociates G-quadruplexes and facilitates transcription2014

    • Author(s)
      S. Pramanik, H. Tateishi-Karimata, and N. Sugimoto
    • Journal Title

      Nucleic Acids Res.

      Volume: 42 Issue: 20 Pages: 12949-12959

    • DOI

      10.1093/nar/gku998

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Nucleic Acids Chemistry beyond the Watson-Crick Double Helix (16): Replication reaction of DNA regulated by the formation of i-motif structure2016

    • Author(s)
      S. Takahashi, J. Brazier A., N. Sugimoto
    • Organizer
      日本化学会第96春季年会(2016)
    • Place of Presentation
      同志社大学京田辺キャンパス(京都府・京田辺市)
    • Year and Date
      2016-03-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] Regulation of Gene Expression under Molecular Crowding Conditions2016

    • Author(s)
      杉本直己
    • Organizer
      バイオマイクロセンシング技術研究センター成果報告会 -生命を工学で解明し、医 療分野に挑む
    • Place of Presentation
      北九州国際会議場(福岡県・北九州市)
    • Year and Date
      2016-01-23
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] New Targets of Pharmaceutical Products; G-quadruplexes of DNA and RNA2016

    • Author(s)
      N. Sugimoto
    • Organizer
      第8回武田科学振興財団薬化学シンポジウム
    • Place of Presentation
      武田薬品工業研修所(大阪府・吹田)
    • Year and Date
      2016-01-21
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] G-quadruplexes Regulate Transcription and Translation2015

    • Author(s)
      H. Tateishi-Karimata, T. Endoh, S. Takahashi, N. Sugimoto
    • Organizer
      2015環太平洋国際化学会議(Pacifichem 2015)
    • Place of Presentation
      Honolulu, (USA)
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] G-quadruplexes Control Gene Expression under Molecular Crowding Condition2015

    • Author(s)
      N. Sugimoto
    • Organizer
      Biochemistry and Molecular Biology (BMB2015)
    • Place of Presentation
      神戸国際会議場(兵庫県・神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] トリプレット病関連遺伝子の複製反応における圧力効果2015

    • Author(s)
      高橋俊太郎、杉本直己
    • Organizer
      第56回高圧討論会
    • Place of Presentation
      JMSアステールプラザ(広島県・広島市)
    • Year and Date
      2015-11-10
    • Related Report
      2015 Annual Research Report
  • [Presentation] 分子クラウディングと高圧力が与える核酸の非標準型構造への影響2015

    • Author(s)
      高橋 俊太郎、杉本直己
    • Organizer
      第38回溶液化学シンポジウム
    • Place of Presentation
      高知市文化プラザカルポート(高知県・高知市)
    • Year and Date
      2015-10-20
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Role of poly(ethylene glycol) during the formation of G-quadruplex under high pressure2015

    • Author(s)
      S. Takahashi, N. Sugimoto
    • Organizer
      第42回国際核酸化学シンポジウム (ISNAC2015)
    • Place of Presentation
      イーグレひめじ あいめっせホール(兵庫県・姫路市)
    • Year and Date
      2015-09-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analysis of the formation of G-quadruplex DNA with hemin under high pressure2015

    • Author(s)
      S. Takahashi, N. Sugimoto
    • Organizer
      第65回錯体化学会討論会
    • Place of Presentation
      奈良女子大学(奈良県・奈良市)
    • Year and Date
      2015-09-22
    • Related Report
      2015 Annual Research Report
  • [Presentation] 高圧力が拓く核酸の新たな可能性2015

    • Author(s)
      高橋俊太郎、杉本直己
    • Organizer
      第64回高分子討論会
    • Place of Presentation
      東北大学川内キャンパス(宮城県・仙台市)
    • Year and Date
      2015-09-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] 二次構造を形成するDNAの複製反応を圧力で制御する2015

    • Author(s)
      高橋 俊太郎、杉本 直己
    • Organizer
      第9回バイオ関連化学シンポジウム
    • Place of Presentation
      熊本大学工学部(熊本県・熊本市)
    • Year and Date
      2015-09-10
    • Related Report
      2015 Annual Research Report
  • [Presentation] G-quadruplex and i-motif of Nucleic Acids under Molecular Crowding and High Pressure2015

    • Author(s)
      S. Takahashi, N. Sugimoto
    • Organizer
      International Conference on High Pressure Science and Technology (AIRAPT)
    • Place of Presentation
      Complutense University of Madrid, Madrid (Spain)
    • Year and Date
      2015-08-30
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] G-quadruplexes control Gene expression2015

    • Author(s)
      H. Tateishi-Karimata, T. Endoh, N. Sugimoto
    • Organizer
      Gordon Research Conference -Nucleosides, Nucleotides & Oligonucleoside-
    • Place of Presentation
      Salve Regina Univerisity, New Port (USA)
    • Year and Date
      2015-06-28
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Thermodynamic Behaviors of Nucleic Acids in a Hydrated Ionic Liquid2015

    • Author(s)
      H. Tateishi-Karimata, N. Sugimoto
    • Organizer
      28th European Symposium on Applied Thermodynamics (ESAT 2015)
    • Place of Presentation
      Royal Olympic Hotel , Athens (Greece)
    • Year and Date
      2015-06-11
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 非二重らせん構造のDNA・RNAの重要な役割2015

    • Author(s)
      杉本直己
    • Organizer
      第55回澱粉研究懇親会
    • Place of Presentation
      ホテルラヴィエ川良(静岡県・伊東市)
    • Year and Date
      2015-06-04
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Translation suppression by G-quadruples2015

    • Author(s)
      T. Endoh, N. Sugimoto
    • Organizer
      5th International Meeting on Quadruplex Nucleic Acids G4thering in Bordeaux
    • Place of Presentation
      IECB University of Bordeaux, Bordeaux (France)
    • Year and Date
      2015-05-26
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Stability and Function of Quadruplexes of Nucleic Acids2015

    • Author(s)
      N. Sugimoto
    • Organizer
      Institute of Atomic and Molecular Sciences, Academia Sinica
    • Place of Presentation
      National Taiwan University, Taipei (Taiwan)
    • Year and Date
      2015-05-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Nucleic Acids Chemistry beyond the Watson-Crick Double Helix (6): Binding Mechanism of G-quadruplex and Its Ligands Elucidated by Pressure Effect2015

    • Author(s)
      S. Takahashi, S. Bhowmik, N. Sugimoto
    • Organizer
      日本化学会第95春季年会(2015)
    • Place of Presentation
      日本大学(船橋キャンパス)
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Research-status Report
  • [Presentation] Nucleic Acids Chemistry beyond the Watson-Crick Double Helix (7): Molecular Crowding Effect on Ribozyme- or Protein-based Polymerase Reactions2015

    • Author(s)
      H. Okura, S. Takahashi, N. Sugimoto
    • Organizer
      日本化学会第95春季年会(2015)
    • Place of Presentation
      日本大学(船橋キャンパス)
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Research-status Report
  • [Presentation] Structures, Interactions, and Functions of Nucleic Acids under Molecular Crowding Conditions2014

    • Author(s)
      N.Sugimoto
    • Organizer
      Asian Chemical Biology Conference (ACBC 2014)
    • Place of Presentation
      National University of Singapore, Singapore
    • Year and Date
      2014-12-15 – 2014-12-17
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] DNAとRNAに潜むもうひとつの遺伝暗号2014

    • Author(s)
      杉本 直己
    • Organizer
      近畿大学産業理工学研究科セミナー
    • Place of Presentation
      近畿大学(飯塚キャンパス)
    • Year and Date
      2014-12-11
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 核酸の挙動に及ぼす分子クラウディングと圧力の影響2014

    • Author(s)
      杉本 直己, 高橋 俊太郎
    • Organizer
      第55回高圧討論会
    • Place of Presentation
      徳島大学(常三島キャンパス)
    • Year and Date
      2014-11-22 – 2014-11-24
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] テロメアDNA配列のP-T依存的構造変化2014

    • Author(s)
      高橋 俊太郎, 杉本 直己
    • Organizer
      第55回高圧討論会
    • Place of Presentation
      徳島大学(常三島キャンパス)
    • Year and Date
      2014-11-22 – 2014-11-24
    • Related Report
      2014 Research-status Report
  • [Presentation] New insights into the binding nucleolin to nucleic acids from physicochemical analysis2014

    • Author(s)
      S. Pramanik, H. Tateishi-Karimata, S. Takahashi, and N. Sugimoto
    • Organizer
      第41回国際核酸化学シンポジウム (ISNAC2014)
    • Place of Presentation
      北九州国際会議場(小倉)
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Research-status Report
  • [Presentation] Pressure and temperature stability diagram of human telomeric DNA2014

    • Author(s)
      S. Takahashi, S. Bhowmik, and N. Sugimoto
    • Organizer
      第41回国際核酸化学シンポジウム (ISNAC2014)
    • Place of Presentation
      北九州国際会議場(小倉)
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Research-status Report
  • [Presentation] 非二重らせん構造に隠された核酸の機能を知る2014

    • Author(s)
      杉本 直己
    • Organizer
      14-1バイオ・高分子研究会
    • Place of Presentation
      にっしょうかん新館(長崎市)
    • Year and Date
      2014-09-26 – 2014-09-28
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 核酸の熱力学的挙動解析と核酸ナノマテリアルの創製2014

    • Author(s)
      杉本 直己
    • Organizer
      第64回錯体化学討論会
    • Place of Presentation
      中央大学
    • Year and Date
      2014-09-18 – 2014-09-20
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 高圧力で誘起されるi-motif DNAの構造安定化効果2014

    • Author(s)
      高橋 俊太郎、杉本 直己
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学(津島キャンパス)
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Research-status Report
  • [Presentation] DNA四重鎖は転写の二次情報を保持しているか?2014

    • Author(s)
      建石 寿枝、遠藤 玉樹、高橋 俊太郎、杉本 直己
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学(津島キャンパス)
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Research-status Report
  • [Presentation] Effect of pressure and molecular crowding on the stability of G-quadruplex DNA2014

    • Author(s)
      S. Takahashi and N. Sugimoto
    • Organizer
      8th International Conference on High Pressure Bioscience and Biotechnology (HPBB)
    • Place of Presentation
      Oniris-Nantes-Atlantic National College of Veterinary Medicine, Food Science and Engineering, France
    • Year and Date
      2014-07-15 – 2014-07-18
    • Related Report
      2014 Research-status Report
  • [Presentation] Thermal Stability and Application of Unusual structures of DNA and RNA2014

    • Author(s)
      N. Sugimoto
    • Organizer
      The 5th International Conference on the Development of Biomedical Engineering
    • Place of Presentation
      International University, Ho Chi Minh City, Vietnam
    • Year and Date
      2014-06-16 – 2014-06-18
    • Related Report
      2014 Research-status Report
  • [Presentation] Thermal Stability of Non-cannonical structures in Template DNA and its Effect on Transcription2014

    • Author(s)
      H. Tateishi-Karimata and N. Sugimoto
    • Organizer
      Gordon Research Conference – Biopolymers
    • Place of Presentation
      Salve Regina University, Newport, USA
    • Year and Date
      2014-06-01 – 2014-06-06
    • Related Report
      2014 Research-status Report
  • [Book] 高圧下での核酸の挙動:極限環境の生命化学(CSJカレントレビュー)2014

    • Author(s)
      高橋俊太郎, 杉本直己
    • Publisher
      化学同人
    • Related Report
      2014 Research-status Report
  • [Book] Noncanonical structures and their thermodynamics of DNA and RNA under molecular crowing: beyond the Watson-Crick double helix: International Review of Cell and Molecular Biology2014

    • Author(s)
      N. Sugimoto
    • Publisher
      Elsevier
    • Related Report
      2014 Research-status Report
  • [Remarks] FIBER 甲南大学 先端生命工学研究所

    • URL

      http://www.konan-fiber.jp

    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2017-05-10  

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