• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Bottom-up design of bio-molecular circuits based on structure-robust analysis

Research Project

Project/Area Number 26630195
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Control engineering/System engineering
Research InstitutionTokyo Institute of Technology

Principal Investigator

Imura Jun-ichi  東京工業大学, 情報理工学(系)研究科, 教授 (50252474)

Co-Investigator(Kenkyū-buntansha) INOUE Masaki  慶應義塾大学, 理工学部, 助教 (80725680)
Co-Investigator(Renkei-kenkyūsha) AIHARA Kazuyuki  東京大学, 生産技術研究所, 教授 (40167218)
SUZUKI Masayasu  宇都宮大学, 工学部, 助教 (10456692)
Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2014: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords生体分子回路 / 分岐解析 / 合成生物学 / ロバスト性解析
Outline of Final Research Achievements

In this research project, we aim to propose a new design strategy of a large-scale bio-molecular circuit which has desired functions. To this end, the following two problems are addressed. 1) For interconnected nonlinear dynamical systems, a computational method of evaluating the robustness of the structural property was proposed. The method is applied to design problem of a bio-molecular switch that models the decision maker of cell fate. 2) We found a special class of dynamical systems that reinforce the robustness via their interconnection. The class is generalized to model a bio-molecular system that expresses the differentiation of a stem cell. It is mathematically shown that the robustness of a function derived from the differentiation is reinforced via bottom-up construction. The robustness reinforcement is illustrated in numerical experiments as well.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (6 results)

All 2015 2014

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Acknowledgement Compliant: 1 results) Presentation (5 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] A computational method for robust bifurcation analysis and its application to biomolecular systems2015

    • Author(s)
      Masaki Inoue, Hikaru Ikuta, Shuichi Adachi, Jun-ichi Imura, and Kazuyuki Aihara
    • Journal Title

      International Journal of Bifurcation and Chaos

      Volume: 25-7 Issue: 07 Pages: 1540012-1540012

    • DOI

      10.1142/s021812741540012x

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Robust bifurcation analysis for a genetic controller design problem to cell fate control2015

    • Author(s)
      Hikaru Ikuta, Masaki Inoue, and Shuichi Adachi
    • Organizer
      4th IFAC Conference on Analysis and Control of Chaotic Systems (CHAOS)
    • Place of Presentation
      首都大学東京(東京都)
    • Year and Date
      2015-08-26
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nonlinear dynamical systems enlarges the domain of attraction with their interconnection2015

    • Author(s)
      Le T. D. Hang, Masaki Inoue, and Jun-ichi Imura
    • Organizer
      Proc. 59th Annual Conference of the Institute of Systems, Control and Information Engineerings (ISCIE)
    • Place of Presentation
      中央電気倶楽部(大阪府)
    • Year and Date
      2015-05-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] Domain of attraction enlarged with interconnection of dynamical systems2015

    • Author(s)
      Masaki Inoue, Shuichi Adachi
    • Organizer
      SICE International Symposium on Control Systems 2015
    • Place of Presentation
      東京電機大学(東京)
    • Year and Date
      2015-03-04 – 2015-03-07
    • Related Report
      2014 Research-status Report
  • [Presentation] Robustness analysis of genetic circuits constructed by bottom-up strategy2014

    • Author(s)
      Masaki Inoue, Takayuki Arai, Jun-ichi Imura, Kenji Kashima, Kazuyuki Aihara
    • Organizer
      19th IFAC World Congress
    • Place of Presentation
      Cape Town International Convention Centre (Cape Town, South Africa)
    • Year and Date
      2014-08-24 – 2014-08-29
    • Related Report
      2014 Research-status Report
  • [Presentation] Instability of interconnected positive real systems2014

    • Author(s)
      Masaki Inoue, Jun-ichi Imura, Takayuki Ishizaki
    • Organizer
      21th International Symposium on Mathematical Theory of Networks and Systems
    • Place of Presentation
      University of Groningen (Groningen, The Netherlands)
    • Year and Date
      2014-07-07 – 2014-07-11
    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2017-05-10  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi