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Development of novel genome editing technologies using a model vertebrate

Research Project

Project/Area Number 26640064
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Laboratory animal science
Research InstitutionUniversity of Yamanashi

Principal Investigator

KAWAHARA Atsuo  山梨大学, 総合研究部, 教授 (10362518)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2014: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywordsゲノム編集技術 / CRISPR/Cas9 / ノックイン法 / ゼブラフィッシュ / 遺伝子破壊 / 遺伝子置換 / 発生工学解析技術 / モデル生物
Outline of Final Research Achievements

CRISPR/Cas9 system provides a powerful genetic tool for genome editing in zebrafish. However, it is still difficult to manipulate precise integration of exogenous DNA at the targeted genomic locus. We developed CRISPR/Cas9-mediated integration of the EGFP reporter containing short homologous sequences flanking the target locus. We succeeded in the efficient genomic integration of EGFP gene into the target site and the genome modification was heritable, presenting a simple CRISPR/Cas9-mediated knock-in system.
We tried to develop a ready-to-used CRISPR/Cas9 that composed of synthetic crRNA and tracrRNA with recombinant Cas9 protein. We found that the injection of crRNAs, tracrRNA and Cas9 protein rapidly induced genome modifications compared with the injection of sgRNAs and Cas9 mRNA. Furthermore, we demonstrated that this ready-to-used CRISPR/Cas9 is acceptable for the visualization of endogenous target gene expression using the EGFP reporter in zebrafish.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (18 results)

All 2015 2014 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results,  Open Access: 4 results,  Acknowledgement Compliant: 6 results) Presentation (6 results) (of which Int'l Joint Research: 1 results,  Invited: 3 results) Book (3 results) Remarks (1 results)

  • [Journal Article] Mindbomb 2 is dispensable for embryonic development and Notch signalling in zebrafish2015

    • Author(s)
      Mikami S, Nakaura M, Kawahara A, Mizoguchi T, Itoh M
    • Journal Title

      Biol Open

      Volume: 4 Issue: 11 Pages: 1576-82

    • DOI

      10.1242/bio.014225

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Maternal and Zygotic Sphingosine Kinase 2 Are Indispensable for Cardiac Development in Zebrafish.2015

    • Author(s)
      Hisano Y, Inoue A, Okudaira M, Taimatsu K, Matsumoto H, Kotani H, Ohga R, Aoki J, Kawahara A.
    • Journal Title

      J Biol Chem.

      Volume: 290 Issue: 24 Pages: 14841-14851

    • DOI

      10.1074/jbc.m114.634717

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Comprehensive analysis of sphingosine-1-phosphate receptor mutants during zebrafish embryogenesis.2015

    • Author(s)
      Hisano Y, Inoue A, Taimatsu K, Ota S, Ohga R, Kotani H, Muraki M, Aoki J, Kawahara A
    • Journal Title

      Genes Cells.

      Volume: 20 Issue: 8 Pages: 647-658

    • DOI

      10.1111/gtc.12259

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Precise in-frame integration of exogenous DNA mediated by CRISPR/Cas9 system in zebrafish.2015

    • Author(s)
      Hisano Y, Sakuma T, Nakade S, Ohga R, Ota S, Okamoto H, Yamamoto T, Kawahara A.
    • Journal Title

      Sci Rep.

      Volume: 5 Issue: 1 Pages: 8841-8841

    • DOI

      10.1038/srep08841

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Maternal and Zygotic Sphingosine Kinase 2 are Indispensable for Cardiac Development in Zebrafish2015

    • Author(s)
      Hisano Y, Inoue A, Okudaira M, Taimatsu K, Matsumoto H, Kotani H, Ohga R, Aoki J, Kawahara A
    • Journal Title

      J Biol Chem.

      Volume: 印刷中

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Overexpression of autotaxin, a lysophosphatidic acid-producing enzyme, enhances cardia bifida induced by hypo-sphingosine-1-phosphate signaling in zebrafish embryo2014

    • Author(s)
      Nakanaga K, Hama K, Kano K, Sato T, Yukiura H, Inoue A, Saigusa D, Tokuyama H, Tomioka Y, Nishina H, Kawahara A, Aoki J
    • Journal Title

      J. Biochem

      Volume: 155 Issue: 4 Pages: 235

    • DOI

      10.1093/jb/mvt114

    • NAID

      40020035029

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Multiple genome modifications by the CRISPR/Cas9 system in zebrafish2014

    • Author(s)
      Satoshi Ota, Yu Hisano, Yohshiya Ikawa, Atsuo Kawahara
    • Journal Title

      Genes to Cells

      Volume: 19 Issue: 7 Pages: 555-564

    • DOI

      10.1111/gtc.12154

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Efficient generation of knock-in transgenic zebrafish carrying reporter/driver genes by CRISPR/Cas9-mediated genome engineering2014

    • Author(s)
      Kimura, Y., Hisano, Y., Kawahara, A., and Higashijima, S.
    • Journal Title

      Scientific Reports

      Volume: 4 Issue: 1 Pages: 6545-6545

    • DOI

      10.1038/srep06545

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Efficient multiple genome modifications induced by the CRISPR/Cas9 system in zebrafish2015

    • Author(s)
      Atsuo Kawahara
    • Organizer
      Conference on Transposition and Genome Engineering 2015
    • Place of Presentation
      Nara Kasugano International Forum(奈良県奈良市)
    • Year and Date
      2015-11-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 小型魚類におけるゲノム編集技術の現状2015

    • Author(s)
      川原敦雄, 安斎賢, 大道裕
    • Organizer
      第21回 小型魚類研究会
    • Place of Presentation
      大阪大学(大阪府吹田市)
    • Year and Date
      2015-09-19
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] CRISPRによる効率的なゲノム改変2015

    • Author(s)
      川原敦雄
    • Organizer
      日本薬理学会
    • Place of Presentation
      名古屋国際会議場(愛知県・名古屋市)
    • Year and Date
      2015-03-18
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Maternally- and zygotically-supplied S1P is essential for the cardiac development in zebrafish2015

    • Author(s)
      川原敦雄
    • Organizer
      6th International Conference on Phospholipase A2 and Lipid Mediator
    • Place of Presentation
      Keio Plaza Hotel(東京都)
    • Year and Date
      2015-02-10
    • Related Report
      2014 Research-status Report
  • [Presentation] ゲノム編集技術を活用した生命科学研究2014

    • Author(s)
      川原敦雄
    • Organizer
      内分泌代謝学サマーセミナー
    • Place of Presentation
      富士レークホテル(山梨県・富士河口湖町)
    • Year and Date
      2014-07-12
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] CRISPR/Cas9-mediated genome modifications in zebrafish2014

    • Author(s)
      川原敦雄
    • Organizer
      日本発生生物学会
    • Place of Presentation
      ウイング愛知(愛知県・名古屋市)
    • Year and Date
      2014-05-28
    • Related Report
      2014 Research-status Report
  • [Book] 進化するゲノム編集技術2015

    • Author(s)
      川原敦雄 他57名
    • Total Pages
      386
    • Publisher
      株式会社エヌ・ティー・エス 刊
    • Related Report
      2015 Annual Research Report
  • [Book] 実験医学 vol.32, No.11, p1721-17252014

    • Author(s)
      太田聡、川原敦雄
    • Publisher
      羊土社
    • Related Report
      2014 Research-status Report
  • [Book] 山梨医科学雑誌30巻1号, p1-52014

    • Author(s)
      川原敦雄
    • Publisher
      山梨大学医学会
    • Related Report
      2014 Research-status Report
  • [Remarks] 山梨大学新着情報トピックス

    • URL

      http://www.yamanashi.ac.jp/topics/post-1275/

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2017-05-10  

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