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Molecular basis of the noncoding RNA function that underlies species specificity

Research Project

Project/Area Number 26650001
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Molecular biology
Research InstitutionHokkaido University

Principal Investigator

Hirose Tetsuro  北海道大学, 遺伝子病制御研究所, 教授 (30273220)

Research Collaborator CHUJO Takeshi  
Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2015: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords核酸 / 細胞・組織 / 発現制御 / 遺伝子 / 蛋白質 / ノンコーディングRNA / 核内構造体 / 種特異性 / エンハンサー
Outline of Final Research Achievements

The human-specific NBPF ncRNA, which is localized in nuclear bodies, is derived from the intronic regions of the human specific NBPF repeat cluster. By the experiment using a splicing inhibitor, we showed that NBPF ncRNAs are the excised introns which were created upon splicing of the precursor transcripts. Next generation RNA sequencing of the RNAs prepared from the cells in which NBPF ncRNA was specifically knocked down revealed that the expression of NOTCH2NL gene which is located adjacent to the NBPF cluster is activated by NBPF ncRNA. We also discovered that NBPF ncRNA exhibits semi-extractable feature in the process of the standard RNA preparation method, which is common to that of NEAT1 ncRNA localized in another nuclear body.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (13 results)

All 2016 2015 2014 Other

All Int'l Joint Research (1 results) Journal Article (5 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 5 results,  Acknowledgement Compliant: 1 results,  Open Access: 1 results) Presentation (6 results) (of which Int'l Joint Research: 1 results,  Invited: 3 results) Book (1 results)

  • [Int'l Joint Research] 西オーストラリア大学(オーストラリア)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Architectural RNAs (arcRNAs): A class of long noncoding RNAs that functions as the scaffold of nuclear bodies2016

    • Author(s)
      Takeshi Chujo, Tomohiro Yamazaki, Tetsuro Hirose
    • Journal Title

      Biochim Biophys Acta

      Volume: 1859 Issue: 1 Pages: 139-146

    • DOI

      10.1016/j.bbagrm.2015.05.007

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles.2015

    • Author(s)
      Hennig S, Kong G, Mannen T, Sadowska A, Kobelke S, Blythe A, Knott G, Iyer S, Ho D, Newcombe EA, Hosoki K, Goshima N, Hatters D, Trinkle-Mulcahy L, Hirose T*, Bond CS*, Fox AH* (*co-corresponding)
    • Journal Title

      J. Cell Biol.

      Volume: 210 Issue: 4 Pages: 3529-539

    • DOI

      10.1083/jcb.201504117

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Clues to long noncoding RNA taxonomy.2015

    • Author(s)
      Hirose T, Nakagawa S.
    • Journal Title

      Biochim. Biophys. Acta.

      Volume: 1859 Issue: 1 Pages: 1-2

    • DOI

      10.1016/j.bbagrm.2015.11.011

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rapid and Efficient Elimination of Specific Nuclear Noncoding RNAs in Mammalian Cells with Antisense Oligonucleotides.2015

    • Author(s)
      Hirose, T., Mannen, T.
    • Journal Title

      Methods Mol. Biol.

      Volume: 1206 Pages: 149-156

    • DOI

      10.1007/978-1-4939-1369-5_13

    • ISBN
      9781493913688, 9781493913695
    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Elements and machinery of non-coding RNAs: toward their taxonomy2014

    • Author(s)
      Tetsuro Hirose, Yuichiro Mishima, Yukihide Tomari
    • Journal Title

      EMBO Reports

      Volume: 印刷中 Issue: 5 Pages: 489-507

    • DOI

      10.1002/embr.201338390

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Re-quantification of paraspeckle architectural components and an exploratory search for novel nuclear RNA bodies by using an improved RNA extraction method2016

    • Author(s)
      Takeshi Chujo, Tomohiro Yamazaki, Shinichi Nakagawa, Tetsuya Kawaguchi, Chikako Fujikawa, Ayaka Kubota, Toru Takumi, Tetsuro Hirose
    • Organizer
      Keystone symposia
    • Place of Presentation
      Santa Fe,USA
    • Year and Date
      2016-02-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] NEAT1 lncRNAの難溶性を考慮したパラスペックル構造因子の再定量と構造構築原理の探究2015

    • Author(s)
      中條 岳志、中川 真一、川口哲哉、内匠 透、廣瀬 哲郎
    • Organizer
      日本分子生物学会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] ノンコーディングRNAによる核内アーキテクチュア2015

    • Author(s)
      廣瀬哲郎
    • Organizer
      Aging, Bone and Cnacer Frontline Forum
    • Place of Presentation
      庭のホテル(東京都千代田区)
    • Year and Date
      2015-05-25
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] RNA機能と神経変性2015

    • Author(s)
      廣瀬哲郎
    • Organizer
      日本神経学会北海道支部会
    • Place of Presentation
      北海道大学(北海道・札幌市)
    • Year and Date
      2015-03-08
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Subnuclear architecture by long noncoding RNAs2014

    • Author(s)
      Tetsuro Hirose
    • Organizer
      理研セミナー
    • Place of Presentation
      理化学研究所横浜キャンパス(神奈川県・横浜市)
    • Year and Date
      2014-12-08
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 難溶性RNAの解析:NEAT1 ncRNAの細胞内再定量と新しいRNA群の探索2014

    • Author(s)
      中條岳志、廣瀬哲郎
    • Organizer
      日本RNA学会年会
    • Place of Presentation
      ウィンクあいち(愛知県・名古屋市)
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Research-status Report
  • [Book] Long Noncoding RNAs: Structures and Functions2015

    • Author(s)
      Mannen, T., Chujo, T., Hirose, T
    • Total Pages
      22
    • Publisher
      Springer
    • Related Report
      2015 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2017-05-10  

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