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Development of intelligent ribozyme and aptamer whose activities switch on in response to environment

Research Project

Project/Area Number 26650014
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

Katahira Masato  京都大学, エネルギー理工学研究所, 教授 (70211844)

Research Collaborator NAGATA Takashi  京都大学, エネルギー理工学研究所, 准教授 (10415250)
MASHIMA Tsukasa  京都大学, エネルギー理工学研究所, 助教 (20707426)
YAMAOKI Yuudai  京都大学, エネルギー理工学研究所, 博士研究員 (00778095)
Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsRNA酵素 / カリウムイオン / In cell NMR / 立体構造 / 4重鎖 / RNAアプタマー / Tatタンパク質 / In cell NMR / リボザイム / 4重鎖 / アプタマー
Outline of Final Research Achievements

Two subunits of ribozyme were joined to each end of rGGAGGAGGAGGA(R12). Under low potassium conditions, R12 takes on an extended structure and thus two subunits are located separately, resulting in no enzymatic activity. Under physiological potassium concentrations, R12 forms a compact quadruplex and thus two subunits are closely located, resulting in exertion of the enzymatic activity. By introducing the complementary strand to ribozyme, the ratio of the activity with/without potassium ions was drastically improved. We also succeeded to directly observe NMR signals of nucleic acids in human cells for the first time.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (7 results)

All 2015 2014 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (3 results) (of which Int'l Joint Research: 1 results,  Invited: 2 results) Remarks (1 results)

  • [Journal Article] K+-responsive off-to-on switching of hammerhead ribozyme through dual G-quadruplex formation requiring no heating and cooling treatment2015

    • Author(s)
      Yamaoki Y, Nagata T, Mashima T, Katahira M
    • Journal Title

      Biochemical and biophysical research communications

      Volume: 468(1-2) Issue: 1-2 Pages: 27-31

    • DOI

      10.1016/j.bbrc.2015.10.173

    • NAID

      120005712951

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Boosting of activity enhancement of K+-responsive quadruplex hammerhead ribozyme2015

    • Author(s)
      Yudai Yamaoki, Tsukasa Mashima, Takashi Nagata and Masato Katahira
    • Journal Title

      Chemical Communications

      Volume: 51 Issue: 27 Pages: 5898-5901

    • DOI

      10.1039/c5cc00961h

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] RNA-directed amino acid coupling as a model reaction for primitive coded translation2014

    • Author(s)
      Harada, K., Aoyama, S., Matsugami, A., Kumar, P.K.R., Katahira, M., Kato, N. and Ohkanda, J.
    • Journal Title

      ChemBioChem

      Volume: 未定 Issue: 6 Pages: 794-798

    • DOI

      10.1002/cbic.201400029

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] Development of intelligent ribozyme/aptamer that sense K+ and switch on their activities2015

    • Author(s)
      片平正人
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Real-time monitoring of enzymatic reaction and switching of ribozyme/aptamer activities through sensing of K+2015

    • Author(s)
      Katahira, M.
    • Organizer
      The 6th Asia-Pacific NMR Symposium
    • Place of Presentation
      Hong Kong Univ. Sci. Tech.(中国・香港)
    • Year and Date
      2015-08-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Switching the activity of functional RNA in response to K+ and quantitative NMR2014

    • Author(s)
      Katahira, M.
    • Organizer
      The 11th Japan-Korea Bilateral Symposium on Biological NMR
    • Place of Presentation
      大阪大学(吹田市)
    • Year and Date
      2014-12-19
    • Related Report
      2014 Research-status Report
    • Invited
  • [Remarks] 片平研究室

    • URL

      http://www.iae.kyoto-u.ac.jp/bio/

    • Related Report
      2015 Annual Research Report 2014 Research-status Report

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Published: 2014-04-04   Modified: 2017-05-10  

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