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Development of localization estimating single particle analysis with GFP label

Research Project

Project/Area Number 26650021
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionOsaka University

Principal Investigator

KATO Takayuki  大阪大学, 生命機能研究科, 助教 (20423155)

Co-Investigator(Renkei-kenkyūsha) MIYATA Tomoko  大阪大学, 生命機能研究科, 特任助教 (30423156)
TERAHARA Naoya  大阪大学, 生命機能研究科, 特任助教 (40554738)
Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords低温電子顕微鏡 / 単粒子解析 / 構造解析 / GFPラベル / 単粒子像解析法 / べん毛モータ / べん毛基部体
Outline of Final Research Achievements

To know the orientation and the localization of specific molecule from low resolution map solved by cryoEM, circular permuted GFP was used for the molecular labeling.
The twelve positions for cpGFP fusion with FliM which is rotor component protein in flagella motor were designed. The expression level, function and localization of labeled-FliM in the cell were evaluated by western blotting, phase contrast microscopy and fluorescence microscopy. From their results, we found that the two cpGFP-labeld FliM candidates of them has the FliM function. We demonstrated that the cpGFP can be used for the molecular labeling. Then rotor with cpGFP-labeled FliM in the candidate was purified and observed by electron microscopy. These cpGFP-labeld FliM was dissociated from rotor structure. We suggest that the position is most important factor for cpGFP labeling.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (13 results)

All 2016 2015 2014 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Acknowledgement Compliant: 1 results) Presentation (11 results) (of which Invited: 2 results) Remarks (1 results)

  • [Journal Article] Three-dimensional reconstruction from electron microscopy images combined with cysteine-mediated crosslinking provide a model of T3SS needle tip complex.2015

    • Author(s)
      Cheung, M.
    • Journal Title

      Mol. Microbiol.

      Volume: 95 Issue: 1 Pages: 31-50

    • DOI

      10.1111/mmi.12843

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] クライオ電子顕微鏡を用いた生体超分子複合体の立体構造解析2016

    • Author(s)
      加藤 貴之
    • Organizer
      第11回「異分野キャリアを持つ医療系生命科学研究者育成支援」事業セミナー
    • Place of Presentation
      岡山大学(岡山県岡山市)
    • Year and Date
      2016-03-16
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] MotA複合体の電子顕微鏡による立体構造解析2016

    • Author(s)
      加藤 貴之、寺原 直矢、難波 啓一
    • Organizer
      2015年度べん毛研究交流会
    • Place of Presentation
      滝の湯(山形県天童市)
    • Year and Date
      2016-03-06
    • Related Report
      2015 Annual Research Report
  • [Presentation] 低温電子線トモグラフィーにおける電子線直接検知型カメラの効果2015

    • Author(s)
      川本 晃大, 森本 雄祐, 加藤 貴之, 難波 啓一
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] CryoEM 3D image reconstruction of the flagellar LP ring complex.2015

    • Author(s)
      Tatli, M., Miyata, T., Kato, T., Namba, K
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] 単粒子解析のための分子同定用GFPラベル2015

    • Author(s)
      Kato, T., Terahara, N., Miyata, T., Namba, K.
    • Organizer
      第53回日本生物物理学会年会, 金沢大学(石川県)
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] High resolution structural analysis of the flagellar hook of Salmonella.2015

    • Author(s)
      Horvath, P., Miyata, T., Takazaki, H., Kato, T., Namba, K
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] 走化性シグナルCheY-Pを結合したべん毛基部体スイッチ複合体の構造2015

    • Author(s)
      Miyata, T., Kato, T., Morimoto, Y.V., Matsunami, H., Namba, K.
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] “手ぶれ補正”機能による高分解能構造解析2015

    • Author(s)
      加藤 貴之、難波 啓一
    • Organizer
      日本顕微鏡学会第71回学術講演会
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Year and Date
      2015-05-15
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] GFP labeling for single particle analysis with cryoEM.2015

    • Author(s)
      Kato, T., Terahara N., Miyata, T., Namba, K.
    • Organizer
      HFSP Japan Meeting
    • Place of Presentation
      ルスツリゾート
    • Year and Date
      2015-02-23 – 2015-02-25
    • Related Report
      2014 Research-status Report
  • [Presentation] GFP labeling for single particle analysis with cryoEM.2014

    • Author(s)
      Kato, T., Terahara N., Miyata, T., Namba, K.
    • Organizer
      第52回日本生物物理学会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-26
    • Related Report
      2014 Research-status Report
  • [Presentation] The survival strategy in bacteria under the starvation stress.2014

    • Author(s)
      Kato, T., Miyata T., Ueta, M., Wada C, Kato T, Wada A., Namba K.
    • Organizer
      2014 International Biophysics Congress
    • Place of Presentation
      Brisbane Convention & Exhibition Centre, Brisbane, Australia
    • Year and Date
      2014-08-04 – 2014-08-06
    • Related Report
      2014 Research-status Report
  • [Remarks] 難波研究室業績一覧

    • URL

      http://www.fbs.osaka-u.ac.jp/jpn/general/lab/02/result/

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2017-05-10  

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