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Regulation of gene expressions by juxtaposed long intergenic regions

Research Project

Project/Area Number 26650125
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Genetics/Chromosome dynamics
Research InstitutionOkayama University

Principal Investigator

Miyaji Mary  岡山大学, 医歯(薬)学総合研究科, 助教 (50349255)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2014: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords核内構造 / 神経細胞分化 / 長大遺伝子 / 遺伝子間領域 / ゲノム環境
Outline of Final Research Achievements

Vertebrate genomes contain a higher proportion of long genes compared to other organisms. Long genes are often located in AT-rich genomic environments and juxtaposed to long intergenic regions. Long genes are enriched in neuronal genes that are often mutated in psychic disorders like autism and schizophrenia. We hypothesized that the genomic environment of long genes are important for transcriptional regulation of long genes. In this study, we showed that topoisomerase IIbeta, in association with its partner protein (hnRNPU/SAF-A/SP120) is likely to be involved in the regulation of long gene expression. To test our model we utilized an immortalized neuronal cell line, RN33B, that is derived from brain stem raphe and transformed in vitro with a temperature-sensitive mutant of SV40 large T antigen. We obtained promising results indicating that this system is worthy of further analysis using genome-editing techniques.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (12 results)

All 2016 2015 2014

All Journal Article (4 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (8 results)

  • [Journal Article] Genomic regions targeted by DNA topoisomerase II frequently interact with a nuclear scafforld/matrix protein hnRNP U/SAF-A/SP1202015

    • Author(s)
      Miyaji, M., Furuta, R., Sano, K., Tsutsui, K. M. and Tsutsui, K.
    • Journal Title

      J. Cell. Biochem.

      Volume: 116 Issue: 4 Pages: 667-85

    • DOI

      10.1002/jcb.25024

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 精神・神経疾患に関与する長大遺伝子のゲノム環境による発現制御機構2015

    • Author(s)
      Mary Miyaji, Kuniaki Sano, Ryohei Furuta, Osamu Hosoya, Kimiko M. Tsutsui, Ken Tsutsui
    • Journal Title

      月刊細胞

      Volume: 47 Pages: 25-28

    • Related Report
      2015 Annual Research Report
  • [Journal Article] 精神・神経疾患に関与する長大遺伝子のゲノム環境による発現制御機構2015

    • Author(s)
      Miyaji M, Sano K, Furuta R, Hosoya O, Tsustui KM, Tsustui K.
    • Journal Title

      細胞

      Volume: 47 Pages: 25-28

    • Related Report
      2014 Research-status Report
  • [Journal Article] Nuclear dynamics of topoisomerase IIβ reflects its catalytic activity that is regulated by binding of RNA to the C-terminal domain.2014

    • Author(s)
      Onoda A, Hosoya O, Sano K, Kiyama K, Kimura H, Kawano S, Furuta R, Miyaji M, Tsutsui K, Tsutsui KM.
    • Journal Title

      Nucleic Acids Res

      Volume: 42 Issue: 14 Pages: 9005-9020

    • DOI

      10.1093/nar/gku640

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 神経細胞終末分化過程でのDNAトポイソメラーゼIIβによるグローバルなクロマチン構造変換を介した遺伝子発現制御機構2016

    • Author(s)
      宮地まり、古田良平、細谷 修、佐野訓明、Kang JiYoung、 舘野 賢、筒井 公子、筒井 研
    • Organizer
      第33 回染色体ワークショップ第14 回核ダイナミクス研究会
    • Place of Presentation
      宮城県宮城郡
    • Year and Date
      2016-01-12
    • Related Report
      2015 Annual Research Report
  • [Presentation] hnRNPU/SAF-A/SP120とDNAトポイソメラーゼIIβ複合体による神経細胞核のグローバルなクロマチン構造変換2015

    • Author(s)
      宮地 まり、細谷 修、古田 良平、佐野 訓明、筒井 公子、筒井 研
    • Organizer
      BMB2015(第38回日本分子生物学会年会、第88回日本生化学会大会 合同大会)
    • Place of Presentation
      兵庫県神戸市
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] DNAトポイソメラーゼIIβは遺伝子間領域に作用し遠隔ゲノム部位間の相互作用を媒介する2015

    • Author(s)
      古田 良平、宮地 まり、佐野 訓明、細谷 修、Kang JiYoung、舘野 賢、筒井 公子、筒井 研
    • Organizer
      BMB2015(第38回日本分子生物学会年会、第88回日本生化学会大会 合同大会)
    • Place of Presentation
      兵庫県神戸市
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] 神経細胞核の3次元DNA配置と遺伝子発現制御2015

    • Author(s)
      宮地 まり、細谷修、古田良平、佐野訓明、筒井公子、筒井研
    • Organizer
      バイオイメージ・インフォマティクスワークショップ2015
    • Place of Presentation
      福岡県福岡市
    • Year and Date
      2015-06-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] レチノイン酸によるラット胎仔表皮の粘膜上皮への分化転換2015

    • Author(s)
      秋元義弘、帯刀章子、宮地まり、鎌田理代、松原幸枝、川上速人
    • Organizer
      日本顕微鏡学会第71回学術講演会
    • Place of Presentation
      京都府京都市
    • Year and Date
      2015-05-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] トポイソメラーゼIIβの酵素活性と核内動態はC末端ドメインへのRNAの結合によって 制御されている2014

    • Author(s)
      小野田彰久、細谷 修、佐野訓明、宮地まり、筒井 研、筒井公子
    • Organizer
      染色体ワークショップ・核ダイナミクス研究会
    • Place of Presentation
      広島県廿日市市
    • Year and Date
      2014-12-15 – 2014-12-17
    • Related Report
      2014 Research-status Report
  • [Presentation] DNAトポイソメラーゼIIβによる核内構造変化と遺伝子発現制御2014

    • Author(s)
      古田良平、宮地まり、細谷修、佐野訓明、筒井公子、筒井 研
    • Organizer
      日本分子生物学会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2014-11-26
    • Related Report
      2014 Research-status Report
  • [Presentation] RNA regulates nuclear dynamics and catalytic activity of topoisomerase IIβ by binding to a novel domain of the enzyme2014

    • Author(s)
      Kimiko M. Tsutsui, Osamu Hosoya, Akihisa Onoda, Kuniaki Sano, Shinji Kawano, Mary Miyaji, Ken Tsutsui1
    • Organizer
      Regulatory RNAs
    • Place of Presentation
      Berkeley, CA, USA
    • Year and Date
      2014-10-19 – 2014-10-21
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2017-05-10  

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