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A method for detecting natural selection at single amino acid substitutions and its applications

Research Project

Project/Area Number 26650134
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Evolutionary biology
Research InstitutionNagoya City University

Principal Investigator

SUZUKI YOSHIYUKI  名古屋市立大学, 大学院システム自然科学研究科, 教授 (70353430)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Keywords分子進化 / 自然選択 / 同義置換 / 非同義置換 / インフルエンザウイルス / ヘマグルチニン / 免疫逃避 / 糖鎖
Outline of Final Research Achievements

In the present study, a method for detecting natural selection at single amino acid substitutions is developed and applied to infer the evolutionary mechanism operating on the change in the number of N-liked glycosylation sites in the hemagglutinin protein of H3N2 human influenza A virus. Positive selection is detected for the amino acid substitutions generating N-linked glycosylation sites, suggesting that N-linked glycans shield antigenic sites from immune responses. The method developed in the present study is applicable to a wide variety of evolutionary problems and the results obtained from the analysis of influenza A virus are useful for prophylaxis and treatment against influenza A virus.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (15 results)

All 2016 2015 2014

All Journal Article (6 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 6 results,  Open Access: 6 results,  Acknowledgement Compliant: 3 results) Presentation (9 results) (of which Int'l Joint Research: 1 results,  Invited: 9 results)

  • [Journal Article] Comparison of the primary structures, cytotoxicities, and affinities to phospholipids of five kinds of cytotoxins from the venom of Indian cobra, Naja naja.2016

    • Author(s)
      Suzuki-Matsubara, M., Athauda, S. B. P., Suzuki, Y., Matsubara, K. and Akihiko Moriyama, A.
    • Journal Title

      Comparative Biochemistry and Physiology, Part C

      Volume: 179 Pages: 158-164

    • DOI

      10.1016/j.cbpc.2015.09.015

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Selecting vaccine strains for H3N2 human influenza A virus.2015

    • Author(s)
      Yoshiyuki Suzuki
    • Journal Title

      Meta Gene

      Volume: 4 Pages: 64-72

    • DOI

      10.1016/j.mgene.2015.03.003

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Evolution of a G6P[6] rotavirus strain isolated from a child with acute gastroenteritis in Ghana, 2012.2015

    • Author(s)
      Chantal A. Agbemabiese, Toyoko Nakagomi, Yoshiyuki Suzuki, George Armah, and Osamu Nakagomi
    • Journal Title

      Journal of General Virology

      Volume: 96 Issue: 8 Pages: 2219-2231

    • DOI

      10.1099/vir.0.000174

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A candidate packaging signal of human rotavirus differentiating Wa-like and DS-1-like genomic constellations.2015

    • Author(s)
      Yoshiyuki Suzuki
    • Journal Title

      Microbiology and Immunology

      Volume: 59 Issue: 9 Pages: 567-571

    • DOI

      10.1111/1348-0421.12288

    • NAID

      40020601234

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A possible packaging signal in the rotavirus genome2014

    • Author(s)
      Yoshiyuki Suzuki
    • Journal Title

      Genes & Genetic Systems

      Volume: 89 Issue: 2 Pages: 81-86

    • DOI

      10.1266/ggs.89.81

    • NAID

      130004687233

    • ISSN
      1341-7568, 1880-5779
    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Origin of an endogenous bornavirus-like nucleoprotein element in thirteen-lined ground squirrels2014

    • Author(s)
      Yoshiyuki Suzuki, Yuki Kobayashi, Masayuki Horie, Keizo Tomonaga
    • Journal Title

      Genes & Genetic Systems

      Volume: 89 Issue: 3 Pages: 143-148

    • DOI

      10.1266/ggs.89.143

    • NAID

      130004703733

    • ISSN
      1341-7568, 1880-5779
    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] ウイルスの分子進化解析からわかること2016

    • Author(s)
      鈴木 善幸
    • Organizer
      平成27年度動物医科学研究センターセミナー
    • Place of Presentation
      日本大学、神奈川県藤沢市
    • Year and Date
      2016-01-12
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ロタウイルスのパッケージングシグナル2015

    • Author(s)
      鈴木 善幸
    • Organizer
      日本遺伝学会第87回大会ワークショップ「分節型ウイルスにおける遺伝子再集合による進化」
    • Place of Presentation
      東北大学、宮城県仙台市
    • Year and Date
      2015-09-25
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Selecting vaccine strains for H3N2 human influenza A virus.2015

    • Author(s)
      Yoshiyuki Suzuki
    • Organizer
      Biodiversity and environmental medicine in South East and East Asia based on molecular biology 2015
    • Place of Presentation
      名古屋市立大学、愛知県名古屋市
    • Year and Date
      2015-07-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Selecting vaccine strains for H3N2 human influenza A virus.2015

    • Author(s)
      鈴木 善幸
    • Organizer
      国立遺伝学研究所研究会「ビッグデータ時代の分子進化」
    • Place of Presentation
      国立遺伝学研究所、静岡県三島市
    • Year and Date
      2015-06-27
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ウイルスの分子進化解析からわかること2015

    • Author(s)
      鈴木 善幸
    • Organizer
      東海医学会例会
    • Place of Presentation
      東海大学、神奈川県伊勢原市
    • Year and Date
      2015-06-18
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ウイルスの分子進化解析からわかること2015

    • Author(s)
      鈴木 善幸
    • Organizer
      藤田保健衛生大学第204回医学セミナー(特別講演89回)
    • Place of Presentation
      藤田保健衛生大学、愛知県豊明市
    • Year and Date
      2015-06-05
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Packaging mechanisms in viruses with segmented genomes.2014

    • Author(s)
      Yoshiyuki Suzuki
    • Organizer
      Nagasaki University Seminar
    • Place of Presentation
      長崎大学(長崎県・長崎市)
    • Year and Date
      2014-10-22
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Packaging mechanisms in viruses with segmented genomes.2014

    • Author(s)
      鈴木 善幸
    • Organizer
      第16回日本進化学会年会ワークショップ「ウイルスと宿主の共進化のダイナミクス」
    • Place of Presentation
      高槻現代劇場(大阪府・高槻市)
    • Year and Date
      2014-08-22
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Packaging mechanisms in viruses with segmented genomes.2014

    • Author(s)
      鈴木 善幸
    • Organizer
      国立遺伝学研究所研究会「ゲノム編集時代の分子進化」
    • Place of Presentation
      国立遺伝学研究所(静岡県・三島市)
    • Year and Date
      2014-06-29
    • Related Report
      2014 Research-status Report
    • Invited

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Published: 2014-04-04   Modified: 2017-05-10  

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