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One Fungus One Name (1F=1N) on yeasts

Research Project

Project/Area Number 26650148
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Biodiversity/Systematics
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Takashima Masako  国立研究開発法人理化学研究所, バイオリソースセンター, ユニットリーダー (20333304)

Co-Investigator(Renkei-kenkyūsha) ENDOH Rikiya  国立研究開発法人理化学研究所, バイオリソースセンター, 協力研究員 (90634494)
SUGITA Takashi  明治薬科大学, 薬学部, 教授 (10312076)
Research Collaborator MANABE Ri-ichiro  国立研究開発法人理化学研究所, ライフサイエンス技術基盤研究センター, 上級研究員 (30280837)
IWASAKI Wataru  東京大学, 理学(系)研究科(研究院), 准教授 (50545019)
OHKUMA Moriya  国立研究開発法人理化学研究所, バイオリソースセンター, 室長 (10270597)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
KeywordsOne Fungus One Name / メルボルン規約 / 酵母分類 / 系統樹 / ハイブリッドゲノム / Trichosporonales目 / Trichosporon属 / ゲノム分類 / 酵母分類学 / Trichosporonales / ハラタケ亜門 / サビキン亜門 / One fungus one name / Trichosporon
Outline of Final Research Achievements

According to the "One Fungus = One Name (1F=1N)" principle implemented by the Code of Nomenclature for algae, fungi, and plants (Melbourne code), yeast phylogeny is studied to reclassify the polyphyletic taxa under the collaboration with the yeast taxonomic community in the world. For making a backbone tree with high quality, we constructed phylogenetic trees based on (1) the 30 orthologous genes selected from draft genome data and (2) whole genomes, using the Trichosporonales species as an example. We also introduced to use the genome data for obtaining the traits/properties that distinguish one genus from the other, as anamorphic yeast taxa generally lack the morphological characteristic which has been employed for the most important taxonomic criterion in fungi. The data obtained suggests that our strategy would contribute to the taxonomy for other yeast taxa.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (16 results)

All 2017 2016 2015 2014

All Journal Article (5 results) (of which Int'l Joint Research: 1 results,  Acknowledgement Compliant: 2 results,  Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (11 results) (of which Int'l Joint Research: 2 results,  Invited: 5 results)

  • [Journal Article] 病原性酵母の分類の現状 ―担子菌酵母CryptococcusとTrichosporonについて―2017

    • Author(s)
      杉田隆、張音実、高島昌子
    • Journal Title

      Medical Mycology Journal

      Volume: 印刷中

    • NAID

      130006035058

    • Related Report
      2016 Annual Research Report
  • [Journal Article] 酵母の種多様性解析に基づく分類体系の再構築とゲノム分類手法の導入2016

    • Author(s)
      高島昌子
    • Journal Title

      Microb. Resource. Syst.

      Volume: 32 Pages: 97-103

    • Related Report
      2016 Annual Research Report
    • Acknowledgement Compliant
  • [Journal Article] Selection of orthologous genes for construction of a highly resolved phylogenetic tree and clarification of the phylogeny of Trichosporonales species.2015

    • Author(s)
      Takashima, M., Manabe, R., Iwasaki, W., Ohyama, A., Ohkuma, M., and Sugita, T.
    • Journal Title

      PLOS ONE

      Volume: 10 Issue: 8 Pages: e0131217-e0131217

    • DOI

      10.1371/journal.pone.0131217

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Phylogeny of yeasts and related filamentous fungi within Pucciniomycotina determined from multigene sequence analyses.2015

    • Author(s)
      Wang, Q.-M., Groenewald, M., Takashima, M., Theelen, B., Han, P.-J., Liu, X.-Z., Boekhout, T., and Bai, F.-Y.
    • Journal Title

      Stud. Mycol.

      Volume: 81 Issue: 1 Pages: 27-53

    • DOI

      10.1016/j.simyco.2015.08.002

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 第10 回国際菌学会(IMC10)における酵母の菌種名に関する議論2015

    • Author(s)
      高島昌子, 張音実, 杉田隆
    • Journal Title

      Medical Mycology Journal

      Volume: 56J

    • NAID

      130005076391

    • Related Report
      2015 Research-status Report
  • [Presentation] ゲノムデータに基づく Trichosporonales 目の系統解析2017

    • Author(s)
      高島昌子、Sira Sriswasdi、西村祐貴、眞鍋理一郎、杉田隆、遠藤力也、岩崎渉、大熊盛也
    • Organizer
      第11回日本ゲノム微生物学会
    • Place of Presentation
      慶應義塾大学湘南藤沢キャンパス(神奈川県藤沢市)
    • Year and Date
      2017-03-02
    • Related Report
      2016 Annual Research Report
  • [Presentation] 病原真菌等120株のドラフトゲノムの公開とこれに基づくTrichosporon属の全ゲノム系統樹2016

    • Author(s)
      高島昌子、杉田隆
    • Organizer
      第60回日本医真菌学会総会・学術集会
    • Place of Presentation
      東京都立産業貿易センター台東館(東京都台東区)
    • Year and Date
      2016-10-01
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Upgrading a sequence-based yeast classification system: A genome-wide phylogenetic study of the order Trichosporonales.2016

    • Author(s)
      Masako Takashima, Ri-ichiroh Manabe, Sira Sriswasdi, Wataru Iwasaki, Rikiya Endoh, Moriya Ohkuma, Takashi Sugita
    • Organizer
      14th International Congress on Yeasts
    • Place of Presentation
      淡路夢舞台国際会議センター(兵庫県淡路市)
    • Year and Date
      2016-09-14
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 担子菌系酵母のThe Yeasts 第5版以降の分類体系変更の概要2016

    • Author(s)
      高島昌子、遠藤力也、大熊盛也
    • Organizer
      日本微生物資源学会第23回大会
    • Place of Presentation
      千葉大学けやき会館(千葉県千葉市)
    • Year and Date
      2016-07-05
    • Related Report
      2016 Annual Research Report
  • [Presentation] 酵母の多様性および分類学的研究とそれに基づくゲノム情報の整備2016

    • Author(s)
      高島昌子
    • Organizer
      日本微生物資源学会第23回大会
    • Place of Presentation
      千葉大学けやき会館(西千葉キャンパス)
    • Year and Date
      2016-07-05
    • Related Report
      2016 Annual Research Report
  • [Presentation] 全ゲノム情報に基づくTrichosporon属の高解像度分子系統樹の提示ー新しい分類体系構築に向けて2015

    • Author(s)
      高島昌子, 杉田隆
    • Organizer
      第59回日本医真菌学会総会・学術集会
    • Place of Presentation
      札幌
    • Year and Date
      2015-10-09
    • Related Report
      2015 Research-status Report
  • [Presentation] A highly resolved phylogenetic tree of Trichosporonales species based on multiple gene sequence analysis2015

    • Author(s)
      Masako Takashima, Ri-ichiroh Manabe, Wataru Iwasaki, Akira Ohyama, Moriya Ohkuma, Takashi Sugita
    • Organizer
      International Specialized Symposium on Yeasts, ISSY32
    • Place of Presentation
      ペルージャ、イタリア
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 酵母の名称変更オーバービュー2014

    • Author(s)
      高島昌子
    • Organizer
      第58回日本医真菌学会総会・学術集会
    • Place of Presentation
      ワークピア横浜・横浜産貿ホール(横浜市中区山下町)横浜
    • Year and Date
      2014-11-01 – 2014-11-02
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 国際菌学会(2014年 タイ)報告 (MINCYサロン)2014

    • Author(s)
      高島昌子
    • Organizer
      第8回新産業酵母研究会講演会
    • Place of Presentation
      産総研・臨海副都心センター別館(東京東京都江東区青海)
    • Year and Date
      2014-10-17
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 日本の酵母の種多様性と生物遺伝資源としての期待2014

    • Author(s)
      高島昌子、杉田 隆、島 純、谷村あゆみ、遠藤力也、大熊盛也
    • Organizer
      第21回酵母合同シンポジウム
    • Place of Presentation
      東京大学伊藤国際学術研究センター伊藤謝恩ホール(東京都文京区本郷)
    • Year and Date
      2014-09-03 – 2014-09-04
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Species diversity of yeasts in Japan: its potential as a biological resource2014

    • Author(s)
      高島昌子、杉田 隆、島 純、谷村あゆみ、遠藤力也、大熊盛也
    • Organizer
      第10回国際菌学会(The 10th International Mycological Congress)
    • Place of Presentation
      バンコク
    • Year and Date
      2014-08-03 – 2014-08-08
    • Related Report
      2014 Research-status Report
    • Invited

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Published: 2014-04-04   Modified: 2018-03-22  

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