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Development of genome engineering technology to create genome diversity in yeast

Research Project

Project/Area Number 26660066
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Applied microbiology
Research InstitutionSojo University (2015)
Osaka University (2014)

Principal Investigator

HARASHIMA Satoshi  崇城大学, 生物生命学部, 教授 (70116086)

Co-Investigator(Kenkyū-buntansha) SUGIYAMA Minetaka  大阪大学, 工学研究科, 准教授 (80379130)
SASANO Yu  大阪大学, 工学研究科, 助教 (90640194)
Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords酵母 / ゲノム工学 / ゲノム編集 / 染色体工学 / ゲノム機能 / 育種 / ゲノムの再編成工学 / ゲノム育種 / 多様性創出工学
Outline of Final Research Achievements

We have previously developed chromosome splitting technology (PCS) in the yeast Saccharomyces cerevisiae. It is based on homologous recombination and enables splitting of a chromosome at any point to form two newly derived chromosomes. However, because of low homologous recombination activity, PCS is limited to a single site at a time, which makes the splitting of multiple loci laborious and time-consuming. In this study, we have developed efficient and versatile genome engineering technology named CRISPR-PCS by integrating PCS with the genome editing CRISPR/Cas system. This integration allowed activation of homologous recombination. In fact, the CRISPR-PCS enabled generation of simultaneous multiple chromosome splitting such as generation of up to five derived chromosomes from a single chromosome and eight derived chromosomes from four different chromosomes. The CRISPR-PCS technology should contribute to not only breeding novel yeast strains but also revealing genome function.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (40 results)

All 2016 2015 2014 Other

All Journal Article (13 results) (of which Peer Reviewed: 13 results,  Open Access: 2 results,  Acknowledgement Compliant: 4 results) Presentation (23 results) (of which Int'l Joint Research: 4 results,  Invited: 5 results) Book (2 results) Remarks (2 results)

  • [Journal Article] Improved stress resistance and ethanol production by segmental haploidization of the diploid genome in Saccharomyces cerevisiae2016

    • Author(s)
      Kaboli S, Miyamoto T, Sunada K, Sasano Y, Sugiyama M, Harashima S
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 未定 Issue: 6 Pages: 638-644

    • DOI

      10.1016/j.jbiosc.2015.10.012

    • NAID

      40020873418

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Core regulatory components of the PHO pathway are conserved in the methylotrophic yeast Hansenula polymorpha2016

    • Author(s)
      Zhou Y, Yuikawa N, Nakatsuka H, Maekawa H, Harashima S, Nakanishi Y, Kaneko Y.
    • Journal Title

      Current Genetics

      Volume: 印刷中

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Overexpression of ESBP6 improves lactic acid resistance and production in Saccharomyces cerevisiae.2016

    • Author(s)
      Sugiyama M, Akase SP, Nakanishi R, Kaneko Y, Harashima S
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 印刷中 Issue: 4 Pages: 415-420

    • DOI

      10.1016/j.jbiosc.2016.03.010

    • NAID

      40020966107

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide construction of a series of designed segmental aneuploids in Saccharomyces cerevisiae2015

    • Author(s)
      Natesuntorn W, Iwami K, Matsubara Y, Sasano Y, Sugiyama M, Kaneko Y, Harashima S
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 12510-12526

    • DOI

      10.1038/srep12510

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nuclear localization domains of GATA activator Gln3 are required for transcription of target genes through dephosphorylation in Saccharomyces cerevisiae.2015

    • Author(s)
      Numamoto M, Tagami S, Ueda Y, Imabeppu Y, Sasano Y, Sugiyama M, Maekawa H, Harashima S.
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 120 Issue: 2 Pages: 121-127

    • DOI

      10.1016/j.jbiosc.2014.12.017

    • NAID

      110009978121

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Type 2C protein phosphatase Ptc6 participates in activation of the Slt2-mediated cell wall integrity pathway in Saccharomyces cerevisiae.2015

    • Author(s)
      Sharmin D, Sasano Y, Sugiyama M, Harashima S.
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 119 Issue: 4 Pages: 392-398

    • DOI

      10.1016/j.jbiosc.2014.09.013

    • NAID

      110009942817

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Stabilization of mini-chromosome segregation during mitotic growth by overexpression of YCR041W and its application to chromosome engineering in Saccharomyces cerevisiae.2015

    • Author(s)
      Sasano Y, Yamagishi K, Tanikawa M, Nakazawa T, Sugiyama M, Kaneko Y, Harashima S.
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 119 Issue: 5 Pages: 526-531

    • DOI

      10.1016/j.jbiosc.2014.10.006

    • NAID

      110009962605

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Cloning and functional analysis of HpFAD2 and HpFAD3 genes encoding Δ12- and Δ15-fatty acid desaturases in Hansenula polymorpha.2014

    • Author(s)
      Sangwallek, J., Kaneko, Y., Tsukamoto, T., Marui, M., Sugiyama, M., Ono, H., Bamba, T., Fukusaki, E., Harashima, S.
    • Journal Title

      Gene

      Volume: 533 Issue: 1 Pages: 110-118

    • DOI

      10.1016/j.gene.2013.09.115

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Suppression mechanism of the calcium sensitivity in Saccharomyces cerevisiae ptp2Δmsg5Δ double disruptant involves a novel HOG-independent function of Ssk2, transcription factor Msn2 and the protein kinase A component Bcy12014

    • Author(s)
      Lavina, W., Shahsavarani, H., Saidi, A., Sugiyama, M., Kaneko, Y., Harashima, S.
    • Journal Title

      J. Biosci. Bioeng

      Volume: 117 Issue: 2 Pages: 135-141

    • DOI

      10.1016/j.jbiosc.2013.06.022

    • NAID

      110009804062

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Nuclear localization of Haa1, which is linked to its phosphorylation status, mediates lactic acid tolerance in Saccharomyces cerevisiae.2014

    • Author(s)
      Sugiyama, M., Akase, SP., Nakanishi, R., Horie, H., Kaneko, Y., Harashima, S.
    • Journal Title

      Appl. Environ. Microbiol

      Volume: 80 Issue: 11 Pages: 3488-3495

    • DOI

      10.1128/aem.04241-13

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Genome-wide mapping of unexplored essential regions in the Saccharomyces cerevisiae genome: evidence for hidden synthetic lethal combinations in a genetic interaction network.2014

    • Author(s)
      Kaboli, S., Yamakawa, T., Sunada, K., Takagaki, T., Sasano, Y., Sugiyama, M., Kaneko, Y., Harashima, S.
    • Journal Title

      Nucleic Acids Res

      Volume: 42 Issue: 15 Pages: 9838-9853

    • DOI

      10.1093/nar/gku576

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Effects of deletion of different PP2C protein phosphatase genes on stress responses in Saccharomyces cerevisiae.2014

    • Author(s)
      Sharmin, D., Sasano, Y., Sugiyama, M., Harashima, S.
    • Journal Title

      Yeast

      Volume: 10 Issue: 10 Pages: 393-409

    • DOI

      10.1002/yea.3032

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] 多様性創出ゲノム工学技術の開発と微生物育種への応用2014

    • Author(s)
      笹野 佑、Yeon-Hee Kim、杉山 峰崇、原島 俊
    • Journal Title

      生物工学会誌

      Volume: 92 Pages: 589-592

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] 出芽酵母プロテインホスファターゼのゲノムサイエンス2016

    • Author(s)
      原島 俊
    • Organizer
      日本プロテインホスファターゼ研究会 2015 学術集会
    • Place of Presentation
      基礎生物学研究所(愛知県岡崎市)
    • Year and Date
      2016-01-29
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Genome engineering : perspective and challenges for synthetic biotechnology in yeast2015

    • Author(s)
      Harashima S
    • Organizer
      The 27th Annual Meeting of the Thai Society for Biotechnology and International Conference
    • Place of Presentation
      マンダリンホテル(バンコク、タイ)
    • Year and Date
      2015-11-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Improvement of thermotolerance of Saccharomyces cerevisiae for bioethanol production by genome shuffling2015

    • Author(s)
      Minetaka Sugiyama, Junyuan Wu, Yu Sasano, Yoshinobu Kaneko, Chuenchit Boonchird, Satoshi Harashima
    • Organizer
      The 27th Annual Meeting of the Thai Society for Biotechnology and International Conference
    • Place of Presentation
      マンダリンホテル(バンコク、タイ)
    • Year and Date
      2015-11-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ゲノムシャフリングによるキシロース発酵性酵母Spathaspora passalidarum の高温耐性化2015

    • Author(s)
      笹野 佑、林 真帆、藤原悠人、杉山峰崇、原島 俊
    • Organizer
      第67回日本生物工学会大会
    • Place of Presentation
      城山観光ホテル(鹿児島県鹿児島市)
    • Year and Date
      2015-10-26
    • Related Report
      2015 Annual Research Report
  • [Presentation] Bacillus thuringiensis A297株が生産する2種類の抗菌タンパク質2015

    • Author(s)
      浴野圭輔、高橋亮太、斉藤浩之、三田光章、岡 拓二、原島 俊、水城英一
    • Organizer
      第67回日本生物工学会大会
    • Place of Presentation
      城山観光ホテル(鹿児島県鹿児島市)
    • Year and Date
      2015-10-26
    • Related Report
      2015 Annual Research Report
  • [Presentation] バイオエタノール生産のためのゲノムシャフリングによる高温耐性酵母の開発2015

    • Author(s)
      杉山峰崇、呉 俊元、笹野 佑、金子嘉信、原島 俊
    • Organizer
      第67回日本生物工学会大会
    • Place of Presentation
      城山観光ホテル(鹿児島県鹿児島市)
    • Year and Date
      2015-10-26
    • Related Report
      2015 Annual Research Report
  • [Presentation] Improved thermotolerance od Saccharomyces cerevisiae for bioethanol production by genome shuffling2015

    • Author(s)
      Minetaka Sugiyama、 Junyuan Wum Yu Sasano、Satoshi Harashima
    • Organizer
      The 32nd International Specialized Symposium on Yeast
    • Place of Presentation
      Perugia Congress Center(Perugia、イタリア)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] CRISPR-PCS: An efficient and versatile chromosome splitting technology in yeast2015

    • Author(s)
      Yu Sasano, Koki Nagasawa, Saeed Kaboli, Minetaka Sugiyama, Satoshi Harashima
    • Organizer
      The 27th International Conference on Yeast Genetics and Molecular Biology
    • Place of Presentation
      Conference Hall(Levico Terme、イタリア)
    • Year and Date
      2015-09-06
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] CRISPR-PCS:多様な染色体操作が可能な染色体工学技術2015

    • Author(s)
      Yu Sasano、Koki Nagasawa、Saeed Kaboli、Minetaka Sugiyama、Satoshi Hiroshima
    • Organizer
      酵母遺伝学フォーラム第48回研究報告会
    • Place of Presentation
      広島大学(広島県東広島市)
    • Year and Date
      2015-08-31
    • Related Report
      2015 Annual Research Report
  • [Presentation] バイオエタノール生産のためのゲノムシャフリングによる高温耐性酵母の開発2015

    • Author(s)
      杉山峰崇、呉 俊元、笹野 佑、金子嘉信、原島 俊
    • Organizer
      酵母遺伝学フォーラム第48回研究報告会
    • Place of Presentation
      広島大学(広島県東広島市)
    • Year and Date
      2015-08-31
    • Related Report
      2015 Annual Research Report
  • [Presentation] 高温耐性酵母 Hansenula polymorpha による乳酸生産2015

    • Author(s)
      加藤謙斗、笹野 佑、金子嘉信、原島 俊、杉山峰崇
    • Organizer
      酵母遺伝学フォーラム第48回研究報告会
    • Place of Presentation
      広島大学(広島県東広島市)
    • Year and Date
      2015-08-31
    • Related Report
      2015 Annual Research Report
  • [Presentation] CRISPR-PCS法による酵母染色体複数部位の同時分断2014

    • Author(s)
      笹野 佑、長澤宏器、Saeed Kaboli、杉山峰崇、原島 俊
    • Organizer
      日本生物工学会第66回大会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Research-status Report
  • [Presentation] ゲノムエンジニアリングによる出芽酵母二倍体ゲノムの部分一倍体化と育種への応用2014

    • Author(s)
      砂田啓輔、Saeed Kaboli、宮本哲也、笹野 佑、杉山峰崇、原島 俊:
    • Organizer
      日本生物工学会第66回大会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Research-status Report
  • [Presentation] ゲノムシャフリングによる出芽酵母の高温耐性の改良と高温アルコール発酵2014

    • Author(s)
      杉山峰崇、呉 俊元、Badua Mark Anthony A.、笹野 佑、金子嘉信、原島 俊
    • Organizer
      日本生物工学会第66回大会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Research-status Report
  • [Presentation] 高温耐性出芽酵母C3723株におけるCDC19-C遺伝子による高温性獲得機構」2014

    • Author(s)
      Wang Kun、○木村駿太、笹野 佑、杉山峰崇、原島 俊
    • Organizer
      日本生物工学会第66回大会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Research-status Report
  • [Presentation] 酵母を用いた真核生物遺伝子機能の解明とバイオテクノロジーへの応用2014

    • Author(s)
      原島 俊
    • Organizer
      日本生物工学会第66回大会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 酵母バイオテクノロジーの発展とともに40年2014

    • Author(s)
      原島 俊
    • Organizer
      第21回酵母合同シンポジウム
    • Place of Presentation
      東京大学 伊藤国際学術研究センター 伊藤謝恩ホール(東京都)
    • Year and Date
      2014-09-03 – 2014-09-04
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] ゲノム工学技術を用いた出芽酵母新規合成致死遺伝子の探索2014

    • Author(s)
      高垣太緒、Saeed Kaboli、砂田啓輔、山川卓也、笹野 佑、杉山峰崇、原島 俊
    • Organizer
      酵母遺伝学フォーラム第47回研究報告会
    • Place of Presentation
      東京大学弥生講堂(東京都)
    • Year and Date
      2014-09-01 – 2014-09-02
    • Related Report
      2014 Research-status Report
  • [Presentation] Segmental haploidization of diploid genome in Saccharomyces cerevisiae and its application to breeding2014

    • Author(s)
      Saeed Kaboli、Tetsuya Miyamoto、Keisuke Sunada、Yu Sasano、Minetaka Sugiyama、Satoshi Harashima
    • Organizer
      酵母遺伝学フォーラム第47回研究報告会
    • Place of Presentation
      東京大学弥生講堂(東京都)
    • Year and Date
      2014-09-01 – 2014-09-02
    • Related Report
      2014 Research-status Report
  • [Presentation] 出芽酵母におけるミニ染色体のワンステップ作成技術の開発2014

    • Author(s)
      長澤宏器、笹野 佑、Saeed Kaboli、杉山峰崇、原島 俊
    • Organizer
      酵母遺伝学フォーラム第47回研究報告会
    • Place of Presentation
      東京大学弥生講堂(東京都)
    • Year and Date
      2014-09-01 – 2014-09-02
    • Related Report
      2014 Research-status Report
  • [Presentation] 過剰発現で乳酸耐性を付与する出芽酵母転写活性化因子Haa1の機能解析2014

    • Author(s)
      中西良太、堀江仁志、松田祐典、笹野 佑、杉山峰崇、原島 俊
    • Organizer
      酵母遺伝学フォーラム第47回研究報告会
    • Place of Presentation
      東京大学弥生講堂(東京都)
    • Year and Date
      2014-09-01 – 2014-09-02
    • Related Report
      2014 Research-status Report
  • [Presentation] 高温耐性出芽酵母C3723株におけるCDC19-C遺伝子による高温耐性化2014

    • Author(s)
      木村駿太、王 琨、○笹野 佑、杉山峰崇、原島 俊
    • Organizer
      酵母遺伝学フォーラム第47回研究報告会
    • Place of Presentation
      東京大学弥生講堂(東京都)
    • Year and Date
      2014-09-01 – 2014-09-02
    • Related Report
      2014 Research-status Report
  • [Presentation] ゲノムシャフリングによる出芽酵母高温耐性の改良と高温アルコール発酵2014

    • Author(s)
      杉山峰崇、呉 俊元、Badua Mark Anthony A.、中西良太、笹野 佑、金子嘉信、原島 俊
    • Organizer
      酵母遺伝学フォーラム第47回研究報告会
    • Place of Presentation
      東京大学弥生講堂(東京都)
    • Year and Date
      2014-09-01 – 2014-09-02
    • Related Report
      2014 Research-status Report
  • [Book] Mechanism of Yeast Adaptation to Weak Organic Acid Stress : In Stress Biology of Yeasts and Fungi (ed by H. Takagi and H. Kitagaki)2015

    • Author(s)
      M. Sugiyama、 Y. Sasano、 S. Harashima
    • Total Pages
      218
    • Publisher
      Springer
    • Related Report
      2015 Annual Research Report
  • [Book] Development and application of novel genome engineering technology in Saccharomyces cerevisiae, IN Microbial production -From genome design to cell engineering-, Microbial Production2014

    • Author(s)
      Sasano Y, Sugiyama M. Harashima S. (2014)
    • Total Pages
      555
    • Publisher
      Springer,
    • Related Report
      2014 Research-status Report
  • [Remarks] 崇城大学 生物生命学部 応用微生物工学科 原島研究室ホームページ

    • URL

      http://rsrch.ofc.sojo-u.ac.jp/sjuhp/KgApp?kyoinId=ymemgkoyggy

    • Related Report
      2015 Annual Research Report
  • [Remarks] 大阪大学大学院工学研究科ゲノム機能工学研究室(原島研究室)

    • URL

      http://www.bio.eng.osaka-u.ac.jp/mg/

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2017-05-10  

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