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Evolutionary engineering of microbial enzyme that regulates the monomer composition in lactate-based polymer

Research Project

Project/Area Number 26660080
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Applied biochemistry
Research InstitutionHokkaido University

Principal Investigator

TAGUCHI SEIICHI  北海道大学, 工学(系)研究科(研究院), 教授 (70216828)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsポリヒドロキシアルカン酸 / 乳酸ポリマー / 乳酸分率 / アセトアセチルCoA還元酵素 / 進化工学 / 速度論的解析 / ポリマー物性 / コリネ型細菌 / 飽和変異
Outline of Final Research Achievements

Microbial synthetic system for lactate (LA)-based polymer, as an advanced member of microbial polyester (polyhydroxyalkanoate) family, was already established by development of lactate-polymerizing enzyme. In order to regulate the monomer composition in P(LA-co-3-hydroxybutyrate (3HB)) copolymer, I have applied evolutionary engineering to NADPH-dependent acetoacetyl-CoA reducatase (PhaB) through the plate assay-based enzyme evolution program. As the result, I obtained two beneficial PhaB enzymes with increased activities that can also increased microbial polymer production. Acquired beneficial properties of these evolved P(3HB) enzymes can be accounted for by flexibility increase in the substrate-related region based on the tertiary structure bearing two domains.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (30 results)

All 2016 2015 2014 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Acknowledgement Compliant: 7 results,  Open Access: 3 results) Presentation (14 results) (of which Int'l Joint Research: 3 results,  Invited: 14 results) Book (4 results) Remarks (1 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Microbial production of poly(lactate-co-3-hydroxybutyrate) from hybrid Miscanthus-derived sugars2016

    • Author(s)
      J. Sun, C. Utsunomia, S. Sasaki, K. Matsumoto, T. Yamada, T. Ooi, S. Taguchi
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 80 Issue: 4 Pages: 818-820

    • DOI

      10.1080/09168451.2015.1116933

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Enhanced cellular content and lactate fraction of the P(lactate-co-3-hydroxybutyrate) produced in recombinant Escherichia coli by the deletion of sigma factor RpoN2015

    • Author(s)
      R. Kadoya, Y. Kodama, K. Matsumoto, S. Taguchi
    • Journal Title

      J. Biosci. Bioeng.

      Volume: 119 Issue: 4 Pages: 427-429

    • DOI

      10.1016/j.jbiosc.2014.09.001

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] MtgA deletion-triggered cell enlargement of Escherichia coli for enhanced intracellular polyester accumulation2015

    • Author(s)
      R. Kadoya, Matsumoto, T. Ooi, S. Taguchi
    • Journal Title

      PLos ONE

      Volume: 10 Issue: 6 Pages: 1-8

    • DOI

      10.1371/journal.pone.0125163

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Indirect positive effects of a sigma factor RpoN deletion on the lactate-based polymer production in Escherichia coli2015

    • Author(s)
      R. Kadoya, Y. Kodama, K. Matsumoto, S. Taguchi
    • Journal Title

      Bioengineered

      Volume: 6 Issue: 5 Pages: 307-311

    • DOI

      10.1080/21655979.2015.1069449

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Molecular weight-dependent degradation of D-lactate-containing polyesters by polyhydroxyalkanoate depolymerases from Variovorax sp. C34 and Alcaligenes faecalis T12015

    • Author(s)
      J. Sun, K. Matsumoto, Y. Tabata, R. Kadoya, T. Ooi, H. Abe, S. Taguchi
    • Journal Title

      Appl. Microbiol. Biotechnol.

      Volume: 99 Pages: 555-9563

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Enhanced poly(3-hydroxybutyrate) production in transgenic tobacco BY-2 cells using engineered acetoacetyl-CoA reductase2015

    • Author(s)
      T. Yokoo, K. Matsumoto, J. M. Nduko, T. Ooi, S. Taguchi
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 3 Issue: 6 Pages: 1-3

    • DOI

      10.1080/09168451.2014.1002448

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Deletion of the pflA gene in Escherichia coli LS5218 and its effects on the production of polyhydroxyalkanoates using beechwood xylan as a feedstock2014

    • Author(s)
      L. S.-Cardona, R. A. Scheel, B. R. Lundgren, A. J. Stipanovic, K. Matsumoto, S. Taguchi, C. T. Nomura
    • Journal Title

      Bioengineered

      Volume: 5 Pages: 284-287

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Improved production of poly(lactic acid)-like polyester based on metabolite analysis to address the rate-limiting step2014

    • Author(s)
      Ken’ichiro Matsumoto, Kota Tobitani, Shunsuke Aoki, Yuyang Song, Toshihiko Ooi, Seiichi Taguchi
    • Journal Title

      AMB Express

      Volume: 4 Issue: 1 Pages: 83-83

    • DOI

      10.1186/s13568-014-0083-2

    • NAID

      120005649137

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Enzymatic characterization of a depolymerase from the isolated bacterium Variovorax sp. C34 that degrades poly(enriched lactate-co-3-hydroxybutyrate)2014

    • Author(s)
      J. Sun, K. Matsumoto, J. M. Nduko, T. Ooi, S. Taguchi
    • Journal Title

      Polym. Degrad. Stabilit.

      Volume: 110 Pages: 44-49

    • DOI

      10.1016/j.polymdegradstab.2014.08.013

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Biosynthesis and properties of PLA-related polymers2016

    • Author(s)
      S. Taguchi
    • Organizer
      ICES Seminar
    • Place of Presentation
      Pesek Road, Jurong Island, Singapore
    • Year and Date
      2016-04-15
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Advances in microbial system for production of PLA-related polymers2015

    • Author(s)
      S. Taguchi
    • Organizer
      American Chemical Society, Pacifichem 2015
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Engineering of Bacteria and pathways toward efficient plastic production from renewable feedstock2015

    • Author(s)
      K. Matsumoto, J. M. Nduko, J. Sun, S. Taguchi
    • Organizer
      5th Symposium on Academic Exchange and Collaborative Research
    • Place of Presentation
      ETH, Zurich, Switzerland
    • Year and Date
      2015-11-27
    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Invited
  • [Presentation] 風船大腸菌でバイオプラスチックを作る2015

    • Author(s)
      田口精一
    • Organizer
      BioJapan2015、主催者セミナー「グリーンバイオ分野の新たなイノベーション創出に向けて」
    • Place of Presentation
      パシフィコ横浜、アネックスホール、横浜
    • Year and Date
      2015-10-15
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Biosynthesis and properties of eco-friendly polymers2015

    • Author(s)
      S. Taguchi
    • Organizer
      Taiwan Bilateral Polymer Symposium 2015
    • Place of Presentation
      Sapporo, Hokkaido
    • Year and Date
      2015-09-03
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 多元ポリ乳酸のバイオマス原料からの微生物合成一貫プロセス開発2015

    • Author(s)
      田口精一
    • Organizer
      第5回 合成生物工学シンポジウム
    • Place of Presentation
      神戸大学統合研究拠点コンベンションホール
    • Year and Date
      2015-08-05
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Biosynthetic PLA-related polymers improved by the metabolic engineering and enzyme engineering2015

    • Author(s)
      S. Taguchi
    • Organizer
      The 5th International Conference on Bio-based Polymers
    • Place of Presentation
      The National University of Singapore (NUS), Faculty of Engineering, Singapore
    • Year and Date
      2015-06-25
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Production of Unusual Microbial Polyesters2014

    • Author(s)
      K. Matsumoto, M. Miyake, S. Terai, T. Kabe, T. Shiba, T. Ooi, T. Iwata, S. Taguchi
    • Organizer
      IPC2014 The 10th SPSJ International Polymer Conference
    • Place of Presentation
      Tsukuba International Congress Center, Tsukuba, Japan
    • Year and Date
      2014-12-02 – 2014-12-05
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Microbial Plastic Factory: New Lactate-Based and Related Biopolymers2014

    • Author(s)
      S. Taguchi
    • Organizer
      2nd International Conference on Bioinspired and Biobased Chemistry & Materials,
    • Place of Presentation
      Nice, France
    • Year and Date
      2014-10-04
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Biosynthesis of polyesters consisting of 2-hydroxyalkanoates and their applications2014

    • Author(s)
      K. Matsumoto, J. Sun, T. Ooi, S. Taguchi
    • Organizer
      ISBP 2014 International Symposium on Biopolymers
    • Place of Presentation
      Mendes Plaza Hotel, Santos, Brazil
    • Year and Date
      2014-09-29
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Microbial plastic factory driven by renewable carbon sources2014

    • Author(s)
      S. Taguchi, K. Matsumoto
    • Organizer
      第8回 日本-韓国バイオマスシンポジウム
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-10
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 二酸化炭素からプラスチックを合成する人工生命システムの創成 -最短の合成ルートは?-2014

    • Author(s)
      松本謙一郎、横尾俊憲、大井俊彦、田口精一
    • Organizer
      日本生物工学会大会シンポジウム
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-09
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Biosynthesis, properties and enzymatic degradation of poly(2-hydroxyalkanoates)2014

    • Author(s)
      K. Matsumoto, S. Taguchi
    • Organizer
      248th ACS National Meeting and Exposition
    • Place of Presentation
      The Hilton San Francisco Union Square, San Fransisco, CA, USA
    • Year and Date
      2014-08-10
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 二酸化炭素の資源化を目指した環境バイオテクノロジー:バイオの力でプラスチックを!2014

    • Author(s)
      田口精一
    • Organizer
      日本工学アカデミー北海道・東北地区札幌講演会
    • Place of Presentation
      北海道大学工学部、アカデミックラウンジ
    • Year and Date
      2014-07-10
    • Related Report
      2014 Research-status Report
    • Invited
  • [Book] Encyclopedia of Polymeric Nanomaterials2015

    • Author(s)
      Ken’ichiro Matsumoto, Kenji Tajima, Seiichi Taguchi
    • Total Pages
      12
    • Publisher
      Springer Berlin Heidelberg,
    • Related Report
      2015 Annual Research Report
  • [Book] ACS Symposium Series, Green Polymer Chemistry: Biobased Materials and Biocatalysis2015

    • Author(s)
      J. Masani Nduko, J. Sun, S. Taguchi
    • Total Pages
      19
    • Publisher
      American Chemical Society
    • Related Report
      2015 Annual Research Report
  • [Book] Corynebacterium glutamicum: From Systems Biology to Biotechnological Applications2015

    • Author(s)
      Y. Song, J. Masani Nduko, K. Matsumoto, S. Taguchi
    • Total Pages
      12
    • Publisher
      Caister Academic Press
    • Related Report
      2015 Annual Research Report
  • [Book] Corynebacterium glutamicum: From Systems Biology to Biotechnological Applications2015

    • Author(s)
      Y. Song, J. M. Nduko, K. Matsumoto, S. Taguchi
    • Total Pages
      196
    • Publisher
      Caister Academic Press
    • Related Report
      2014 Research-status Report
  • [Remarks] http://labs.eng.hokudai.ac.jp/labo/seika/

    • Related Report
      2014 Research-status Report
  • [Patent(Industrial Property Rights)] 高分子量微生物産生ポリエステルの合成法2015

    • Inventor(s)
      松本謙一郎、田口精一
    • Industrial Property Rights Holder
      松本謙一郎、田口精一
    • Industrial Property Rights Type
      特許
    • Filing Date
      2015-08-08
    • Related Report
      2015 Annual Research Report
  • [Patent(Industrial Property Rights)] MtgA遺伝子の欠損した微生物2015

    • Inventor(s)
      田口精一、門屋亨介
    • Industrial Property Rights Holder
      田口精一、門屋亨介
    • Industrial Property Rights Type
      特許
    • Filing Date
      2015-05-10
    • Related Report
      2015 Annual Research Report

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Published: 2014-04-04   Modified: 2017-05-10  

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