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Investigation of practical calculation protocols in the reproduction of spectra of natural products.

Research Project

Project/Area Number 26660093
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Bioorganic chemistry
Research InstitutionHirosaki University

Principal Investigator

Hashimoto Masaru  弘前大学, 農学生命科学部, 教授 (40212138)

Co-Investigator(Kenkyū-buntansha) NEHIRA Tatsuo  広島大学, 大学院総合科学研究科, 准教授 (60321692)
Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2014: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords天然物構造決定 / スペクトル解析 / 分子起動計算予測 / 天然物 / 分子起動計算 / NMR化学シフト予想 / 密度汎関数分子軌道法 / 化学シフト計算 / 電子円二色性スペクトル計算
Outline of Final Research Achievements

Spectral analyses are indispensable in structural determination of natural products. Usually those have required empirical databases. Thus, the reliability decreases in the cases of determinations of structurally unique natural products. On the other hand, remarkable progress of computer technologies enabled us to perform the spectral reproduction based on the non-empirical manner. But this methodology is now insufficient in natural product chemistry due to only a few examples existing. Thus the present study performs the scope and limitation of spectral calculations by investigating the suitable combinations of method of calculations, basis sets, and optimization algorism.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (40 results)

All 2016 2015 2014 Other

All Journal Article (21 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 20 results,  Open Access: 12 results,  Acknowledgement Compliant: 4 results) Presentation (18 results) (of which Int'l Joint Research: 1 results,  Invited: 4 results) Remarks (1 results)

  • [Journal Article] Homopetasinic acid isolated from Diaporthe sp. strain 1308-052016

    • Author(s)
      A Ito, I Kumagai, M Maruyama, H Maeda, A Tonouchi, T Nehira, K Kimura, M Hashimoto
    • Journal Title

      Tetrahedron Letters

      Volume: 57(10) Issue: 10 Pages: 1117-1119

    • DOI

      10.1016/j.tetlet.2016.01.095

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Isolation, absolute structures, and biological properties of cyclohelminthols I-IV from Helminthosporium velutinum yone962016

    • Author(s)
      Yuna Honmura, Shota Uesugi, Hayato Maeda, Kazuaki Tanaka, Tatsuo Nehira, Ken-ichi Kimura, Masaaki Okazaki, Masaru Hashimot
    • Journal Title

      Tetrahedron

      Volume: 72 Issue: 10 Pages: 1400-1405

    • DOI

      10.1016/j.tet.2016.01.036

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Homojesterones: vinylogous analogues of jesterone from Helminthosporium velutinum TS282016

    • Author(s)
      M Arayama, S Uesugi, K Tanaka, H Maeda, T Nehira, K Kimura, M Hashimoto
    • Journal Title

      Tetrahedron

      Volume: 72(7) Issue: 7 Pages: 1031-1035

    • DOI

      10.1016/j.tet.2015.12.077

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cassane diterpenoids from the roots of Caesalpinia decapetala var. japonica and structure revision of caesaljapin2016

    • Author(s)
      S. Kamikawa, S. Oshimo, E. Ohta, T. Nehira, H. Omura, and S. Ohta
    • Journal Title

      Phytochemistry

      Volume: 121 Pages: 50-57

    • DOI

      10.1016/j.phytochem.2015.10.001

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structure Revision of Caesalpinista A and Caesalpinista B and Isolation of a New Furanoditerpenoid from the Cotyledons of Caesalpinia decapetala var. japonica2016

    • Author(s)
      S. Kamikawa, E. Ohta, T. Nehira, H. Omura, and S. Ohta
    • Journal Title

      Helvetica Chimca Acta

      Volume: 99 Issue: 2 Pages: 133-137

    • DOI

      10.1002/hlca.201500171

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Computation-Assisted Structural Elucidation of Epoxyroussoeone and Epoxyroussoedione Isolated from Roussoella japanensis KT16512015

    • Author(s)
      Y Honmura, H Takekawa, K Tanaka, H Maeda, T Nehira, W Hehre, M Hashimoto
    • Journal Title

      Journal of natural products

      Volume: 78(7) Issue: 7 Pages: 1505-1510

    • DOI

      10.1021/np500924n

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Isolation, ECD assisted structural analyses, biosynthetic discussions, and biological activities of epi-cochlioquinones D and its derivatives2015

    • Author(s)
      M Arayama, T Nehira, H Maeda, K Tanaka, H Miyagawa, T Ueno, S Hosokawa, M Hashimoto
    • Journal Title

      Tetrahedron

      Volume: 71(29) Issue: 29 Pages: 4788-4794

    • DOI

      10.1016/j.tet.2015.05.044

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Achaetolide-II isolated from Helminthosporium velutinum TS282015

    • Author(s)
      M Arayama, H Maeda, K Tanaka, N Takada, T Nehira, M Hashimoto
    • Journal Title

      Tetrahedron

      Volume: 71(41) Issue: 41 Pages: 7900-7905

    • DOI

      10.1016/j.tet.2015.08.013

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel himachalene-type sesquiterpenes from male adults of Chinese Windmill butterfly, Byasa alcinous alcinous2015

    • Author(s)
      Hisashi Omura, Taro Noguchi, Tatsuo Nehira
    • Journal Title

      Natural Products Researches

      Volume: 29 Issue: 4 Pages: 1-6

    • DOI

      10.1080/14786419.2015.1019352

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Niphateolide A: isolation from the marine sponge Niphates olemda and determination of its absolute configuration by an ECD analysis2015

    • Author(s)
      H. Kato, T. Nehira, K. Matsuo, T. Kawabata, Y. Kobashigawa, H. Morioka, F. Losung, R. E. P. Mangindaan, N. J. de Voogd, H. Yokosawa, S. Tsukamoto
    • Journal Title

      Tetrahedron

      Volume: 71 Issue: 38 Pages: 6956-6960

    • DOI

      10.1016/j.tet.2015.07.009

    • NAID

      120006897988

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Taichunamides: Unprecedented Prenylated Indole Alkaloids from Aspergillus taichungensis (IBT 19404)2015

    • Author(s)
      9.Ippei Kagiyama, Hikaru Kato, Tatsuo Nehira, Jens C. Frisvad, David H. Sharman, Robert M, Williams, Sachiko Tsukamoto
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 55 Issue: 3 Pages: 1128-1132

    • DOI

      10.1002/anie.201509462

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Isotopic Differentiation Protocol, a Selective Extraction of C- and N-Terminal Ions in ESI-Ms/Ms De Novo Peptide Sequencing2015

    • Author(s)
      .Fujii, M.; Chiba, H.; Tamayama, N.; Kanamaru, S.; Hashimoto, M.
    • Journal Title

      Nat. Prod. Chem. Res.

      Volume: 3 Issue: 1 Pages: 164-164

    • DOI

      10.4172/2329-6836.1000164

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Relative and absolute structure of phomolide C2015

    • Author(s)
      Ito, A.; Maeda, H.; Tonouchi, A.; Hashimoto, M
    • Journal Title

      Biosci. Biotech. Biochem

      Volume: 79 Issue: 7 Pages: 1-3

    • DOI

      10.1080/09168451.2015.1015953

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Isolation and structure elucidation of potential anti-dengue metabolites from tawa-tawa (Euphorbia hirta Linn.)2014

    • Author(s)
      Tayone, W. C.; Tayone, J. C.; Hashimoto, M
    • Journal Title

      Walailak Journal of Science and Technology

      Volume: 11 Pages: 825-832

    • DOI

      10.14456/wjst.2014.65

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Neomacrophorin I, II, and III, novel drimenyl cyclohexanes with hydroxylated butanoates from Trichoderma sp. 1212-032014

    • Author(s)
      3. Hirose, A.; Maeda, H.; Tonouchi, A.; Nehira, T.; Hashimoto, M.
    • Journal Title

      Tetrahedron

      Volume: 70 Issue: 7 Pages: 1458-1463

    • DOI

      10.1016/j.tet.2013.12.087

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] リンゴ果実におけるマイコパラサイト現象の生物有機化学的研究2014

    • Author(s)
      橋本勝
    • Journal Title

      日本化学会生体機能関連部会ニュースレター

      Volume: 28 Pages: 3-6

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Lambertellin system, the mechanism for fungal replacement of Monilinia fructigena with Lambertella corni-maris without competitive inhibition on agar media2014

    • Author(s)
      1.Hirose, A.; Kudo, S.; Murakami, T.; Tanaka, K.; Harada, K.; Hashimoto, M
    • Journal Title

      Bioorg. Med. Chem.

      Volume: 22 Issue: 8 Pages: 2489-2495

    • DOI

      10.1016/j.bmc.2014.02.051

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] absolute configuration determination via comparison of experimental and theoretical electronic circular dichroic spectra2014

    • Author(s)
      Tetsuro Ito, Tatsuo Nehira, Dehydroxylation of stilbenoid oligomers
    • Journal Title

      Tetrahedron Letters

      Volume: 55 Issue: 2 Pages: 314-318

    • DOI

      10.1016/j.tetlet.2013.10.106

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Dehydroxylation of stilbenoid oligomers: absolute configuration determination via comparison of experimental and theoretical electronic circular dichroic spectra2014

    • Author(s)
      Tetsuro Ito, Tatsuo Nehira
    • Journal Title

      Tetrahedron Letters

      Volume: 55 Issue: 35 Pages: 314-318

    • DOI

      10.1016/j.tet.2014.06.074

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Chiroptical molecular propeller based on hexakis(phenylethyl)benzene through the complexation-induced intramolecular transmission of local point chirality2014

    • Author(s)
      Ryo Katoono, Keiichi Kusaka, Shunsuke Kawai, Yuki Tanaka, Keisuke Hanada, Tatsuo Nehira, Kenshu Fujiwara, Takanori Suzuki
    • Journal Title

      Prganic and Biomolecular Chemistry

      Volume: 12 Issue: 47 Pages: 9532-9538

    • DOI

      10.1039/c4ob01601g

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Acanthomanzamines A-E with new manzamine frameworks from the marine sponge Acanthostrongylophora ingens.2014

    • Author(s)
      A. Furusato, H. Kato, T. Nehira, K. Eguchi, T. Kawabata, Y. Fujiwara, F. Losung, R. E. P. Mangindaan, N. J. de Voogd, M. Takeya, H. Yokosawa, S. Tsukamoto
    • Journal Title

      Org. Lett.

      Volume: 16 Issue: 15 Pages: 3888-3891

    • DOI

      10.1021/ol5015569

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Cochlioquinone 化学の新展開―ECD の徹底活用と新たな生物活性考察2015

    • Author(s)
      荒山美紀、前多隼人、田中和明、根平達夫、宮川恒、上野民夫、細川誠二郎、橋本勝
    • Organizer
      University of Saskatchewan Special Simminor
    • Place of Presentation
      yokohama
    • Year and Date
      2015-09-10
    • Related Report
      2015 Annual Research Report
  • [Presentation] Isolation, ECD Assisted Structural Analyses, Biosynthetic Discussions, and Biological activities of epi-Cochlioquinones D and its Derivatives2015

    • Author(s)
      M. Arayama, T. Nehira, H. Maeda, K. Tanaka, H. Miyagawa, T. Ueno, S. Hosokawa, M. Hashimoto
    • Organizer
      15th International Conference on Chiral Spectroscopy
    • Place of Presentation
      札幌
    • Year and Date
      2015-08-31
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Bioorganic Studies on Mycoparasitism on Apple Fruites2015

    • Author(s)
      Masaru Hashimoto
    • Organizer
      University of Saskatchewan Special Simminor
    • Place of Presentation
      サスカチュワン
    • Year and Date
      2015-08-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] Phomolide Cの相対及び絶対配置の決定2015

    • Author(s)
      伊藤厚、殿内暁夫、橋本勝
    • Organizer
      第10回化学生態学研究会
    • Place of Presentation
      函館
    • Year and Date
      2015-06-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] 分子軌道計算支援による新規マクロフォリンの構造決定2015

    • Author(s)
      橋本勝, 本村優奈, 根平達夫
    • Organizer
      第10回化学生態学研究会
    • Place of Presentation
      函館
    • Year and Date
      2015-06-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Spiroleptospholの全合成研究2015

    • Author(s)
      高橋萌子、橋本勝
    • Organizer
      日本農芸化学会2015年度大会
    • Place of Presentation
      岡山
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Research-status Report
  • [Presentation] Phomolide Cの相対及び絶対配置の決定2015

    • Author(s)
      伊藤厚・殿内暁夫・橋本勝
    • Organizer
      日本農芸化学会2015年度大会
    • Place of Presentation
      岡山
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Research-status Report
  • [Presentation] 新規epi-cochlioquinone誘導体と その生合成前駆体の単離と構造2015

    • Author(s)
      荒山美紀、田中和明、前多隼人、根平達夫、橋本勝
    • Organizer
      日本農芸化学会2015年度大会
    • Place of Presentation
      岡山
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Research-status Report
  • [Presentation] Bioorganic Studies on Mycoparasitism on Apple Fruites2014

    • Author(s)
      Masaru Hashimoto
    • Organizer
      Michigan State Univesity Department of Chemistry Seminor
    • Place of Presentation
      Michigan State University
    • Year and Date
      2014-12-05
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 量子化学計算支援によるEpoxyroussoeone 類の構造決定2014

    • Author(s)
      本村優奈、狩原恭平、田中和明、前多隼人、根平達夫、Warren J. Hehrec、橋本勝
    • Organizer
      第56回天然有機化合物討論会
    • Place of Presentation
      高知
    • Year and Date
      2014-10-15 – 2014-10-17
    • Related Report
      2014 Research-status Report
  • [Presentation] リンゴ果実におけるマイコパラサイト現象の生物有機化学的研究2014

    • Author(s)
      橋本勝
    • Organizer
      日本化学会東北支部、青森地区講演会
    • Place of Presentation
      弘前
    • Year and Date
      2014-10-03
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Helminthosporium velutinum TS28が生産する新規epi-cochlioquinone誘導体2014

    • Author(s)
      荒山美紀、田中和明、橋本勝
    • Organizer
      平成26年度 日本農芸化学会北海道支部・東北支部 合同支部大会
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-22
    • Related Report
      2014 Research-status Report
  • [Presentation] Phomolide Cの相対及び絶対配置の決定2014

    • Author(s)
      伊藤厚、殿内暁夫、橋本勝
    • Organizer
      平成26年度 日本農芸化学会北海道支部・東北支部 合同支部大会
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-22
    • Related Report
      2014 Research-status Report
  • [Presentation] MS/MSペプチド配列解析における簡便なイオン識別法の開発2014

    • Author(s)
      橋本勝、藤井眞、千葉洋、玉山方子
    • Organizer
      平成26年度 日本農芸化学会北海道支部・東北支部 合同支部大会
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-22
    • Related Report
      2014 Research-status Report
  • [Presentation] リンゴ果実におけるマイコパラサイト現象の生物有機化学的研究2014

    • Author(s)
      橋本勝
    • Organizer
      北海道大学理学部化学科講演会
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-12
    • Related Report
      2014 Research-status Report
  • [Presentation] Neomacrophorin類の構造決定2014

    • Author(s)
      橋本勝, 廣瀬あかね, 殿内暁夫, 前多隼人, 根平達夫
    • Organizer
      第9回化学生態学研究会
    • Place of Presentation
      函館
    • Year and Date
      2014-06-28
    • Related Report
      2014 Research-status Report
  • [Presentation] 量子化学計算支援によるEpoxyrousseone類の構造決定2014

    • Author(s)
      本村優奈, 狩原恭平, 田中和明, 前多隼人, 根平達夫, Warren Hehre, 橋本勝
    • Organizer
      第9回化学生態学研究会
    • Place of Presentation
      函館
    • Year and Date
      2014-06-28
    • Related Report
      2014 Research-status Report
  • [Presentation] 計算機支援による天然物の構造決定2014

    • Author(s)
      橋本勝
    • Organizer
      理研シンポジウム物質構造解析2014:MS とNMR の基礎と実践
    • Place of Presentation
      理化学研究所
    • Year and Date
      2014-06-20
    • Related Report
      2014 Research-status Report
    • Invited
  • [Remarks] 有機実験室

    • URL

      http://nature.cc.hirosaki-u.ac.jp/lab/2/biochem/yuki/

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2017-05-10  

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