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Every gene is everywhere, but the environment selects

Research Project

Project/Area Number 26660152
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Aquatic bioproduction science
Research InstitutionThe University of Tokyo

Principal Investigator

Ijichi Minoru  東京大学, 大気海洋研究所, 特任研究員 (10633894)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Keywordsメタマルチオミクス / メタゲノム / メタプロテオーム / メタメタボローム / セントラルドグマ / メタオーム / 海洋微生物生態系 / 環境適応 / メタオミクス / マルチオミクス / 西部北太平洋
Outline of Final Research Achievements

The aim of this research is to verify, “Every gene is everywhere, but the environment selects” hypotheses by conducting meta-omics approach in different spatial marine environments. The seawater samples for meta-omics analyses obtained from surface, mesopelagic and bathypelagic of each subarctic and subtropical zone in the western North Pacific Ocean.
Many microorganisms belonging to different taxonomical position may share the functionally similar genes. Also, genes coding for basic cellular metabolic functions are scattered among various microorganisms in the wide range of environments. Therefore, shift of the community structures is not necessarily accompanied with genetic structures. Under certain environment, genes to be expressed for particular functions are selected and the expression gives advantages to the cells harbouring the gene. Further meta-genomic analyses together with multi-omics approaches may verify this hypothesis in different temporal marine environments.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (6 results)

All 2016 2015 2014

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (4 results) (of which Invited: 1 results)

  • [Journal Article] Genomic and metagenomic analysis of microbes in a soil environment affected by the 2011 Great East Japan Earthquake Tsunami2016

    • Author(s)
      Hiraoka S, Machiyama A, Ijichi M, Inoue K, Oshima K, Hattori M, Yoshizawa S, Kogure K, and Iwasaki W
    • Journal Title

      BMC Genomics

      Volume: 17 Issue: 1 Pages: 53-53

    • DOI

      10.1186/s12864-016-2380-4

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Microbial Processes in RO Membrane System2015

    • Author(s)
      Kazuhiro Kogure, Yui Takahashi, Minoru Ijichi, Eiko Ikemoto, and Hiroshi X. Chiura
    • Journal Title

      MEMBRANE

      Volume: 40 Pages: 91-97

    • NAID

      130005069468

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Presentation] 海洋微生物を対象としたメタトランスクリプトーム解析のための海洋遺伝子アーカイバシステムの開発2016

    • Author(s)
      福場辰洋、藤村玲子、金子 亮、伊知地稔、木暮一啓
    • Organizer
      2016年度日本海洋学会春季大会
    • Place of Presentation
      東京大学本郷キャンパス、東京
    • Year and Date
      2016-03-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Every gene is everywhere, but the environment selects2014

    • Author(s)
      伊知地稔、町山麻子、高橋唯、千浦博、伊藤世人、北出有、花田茂久、田中祐之、岩崎渉、木暮一啓
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      静岡
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Research-status Report
  • [Presentation] Meta-omics approach to biofilm communities on the membrane of seawater reverse osmosis system2014

    • Author(s)
      Minoru Ijichi, Asako Machiyama, Yui Takahashi, Hiroshi X. Chiura, Yohito Ito, Tamotsu Kitade, Shigehisa Hanada, Yuji Tanaka, Wataru Iwasaki and Kazuhiro Kogure
    • Organizer
      15th International Symposium on Microbial Ecology
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2014-08-24 – 2014-08-29
    • Related Report
      2014 Research-status Report
  • [Presentation] Every gene is everywhere, but the environment selects2014

    • Author(s)
      伊知地稔、町山麻子、高橋唯、千浦博、伊藤世人、北出有、花田茂久、田中祐之、岩崎渉、木暮一啓
    • Organizer
      第8回細菌学若手コロッセウム
    • Place of Presentation
      北海道
    • Year and Date
      2014-08-06 – 2014-08-08
    • Related Report
      2014 Research-status Report
    • Invited

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Published: 2014-04-04   Modified: 2017-05-10  

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