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Complete Analysis of Human Proteome by Deep Proteomics

Research Project

Project/Area Number 26670015
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Physical pharmacy
Research InstitutionKyoto University

Principal Investigator

Ishihama Yasushi  京都大学, 薬学研究科(研究院), 教授 (30439244)

Co-Investigator(Renkei-kenkyūsha) SUGIYAMA Naoyuki  京都大学, 大学院薬学研究科, 准教授 (50545704)
WAKABAYASHI Masaki  京都大学, 大学院薬学研究科, 助教 (70552024)
Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2015: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2014: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywordsプロテオミクス / LC-MS / プロテオーム / 質量分析
Outline of Final Research Achievements

We aimed to develop a deep proteomics analytical system to identify and quantify complete human proteome expressed in human cells. We developed ultrahigh resolution LC-MS systems using meter-scale monolithic silica capillary columns in combined with meter-scale HILIC columns for fractionating or slicing samples. As a result, when using the slicing mode, the number of identified proteins increased by 46%, compared with the conventional method, Further, using the fractionation method, we successfully identified 10,000 human proteins with 200-fold sensitivity and 6-times throughput.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (8 results)

All 2015 2014

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Acknowledgement Compliant: 1 results) Presentation (7 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results)

  • [Journal Article] Systematic profiling of the bacterial phosphoproteome reveals bacterium-specific features of phosphorylation.2015

    • Author(s)
      Lin MH, Sugiyama N, Ishihama Y.
    • Journal Title

      Sci Signal.

      Volume: 8 Issue: 394

    • DOI

      10.1126/scisignal.aaa3117

    • NAID

      120005682544

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] ヒトショットガンプロテオーム解析のための高分離能二次元ナノLC2015

    • Author(s)
      鎌倉 健雄, 市原 駿, 若林 真樹, 杉山 直幸, 石濱 泰
    • Organizer
      第26回クロマトグラフィー科学会議
    • Place of Presentation
      九州大学医系キャンパス(福岡)
    • Year and Date
      2015-11-11
    • Related Report
      2015 Annual Research Report
  • [Presentation] Slicing the Human Proteome: Chromatographic Challenges Facing Complete Human Proteome & Phosphoproteome Analysis2015

    • Author(s)
      Y. Ishihama
    • Organizer
      Keystone Symposia meeting on “The Human Proteome”
    • Place of Presentation
      Clarion Hotel Sign Stockholm (Sweden)
    • Year and Date
      2015-04-24
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] メートル長C18モノリス型シリカカラムを用いた高分離能二次元ナノLCMSプロテオミクス2014

    • Author(s)
      鎌倉健雄、市原駿、堀江勘太、若林真樹、 杉山直幸、 石濱泰
    • Organizer
      第25回クロマトグラフィー科学会議
    • Place of Presentation
      京都大学桂キャンパス(京都)
    • Year and Date
      2014-12-07 – 2014-12-12
    • Related Report
      2014 Research-status Report
  • [Presentation] タンパク質のN末端大規模解析に向けた新規N末端ペプチド濃縮法の開発2014

    • Author(s)
      木村 迪子 , 橋本 貴行, 若林 真樹, 杉山 直幸, 石濱 泰
    • Organizer
      日本分析化学会第63年会
    • Place of Presentation
      広島大学東広島キャンパス(広島)
    • Year and Date
      2014-09-17 – 2014-09-19
    • Related Report
      2014 Research-status Report
  • [Presentation] ナローボアメートル長モノリス型シリカカラムを用いたプロテオミクスLC-MS高感度システムの構築2014

    • Author(s)
      市原 駿、鎌倉 健雄、堀江 勘太、若林 真樹、 杉山 直幸、石濱 泰
    • Organizer
      第27回バイオメディカル分析科学シンポジウム
    • Place of Presentation
      帝京大学板橋キャンパス(東京)
    • Year and Date
      2014-08-20 – 2014-08-21
    • Related Report
      2014 Research-status Report
  • [Presentation] メートル長モノリス型シリカカラムを用いたLC-MS/MSシステムによるヒトプロテオーム解析2014

    • Author(s)
      鎌倉健雄、市原駿、堀江勘太、若林真樹、 杉山直幸、 石濱泰
    • Organizer
      日本プロテオーム学会2014年会
    • Place of Presentation
      つくば国際会議場(茨城)
    • Year and Date
      2014-07-17 – 2014-07-18
    • Related Report
      2014 Research-status Report
  • [Presentation] High Resolution HILIC for Proteomic LC-MS2014

    • Author(s)
      Kanta Horie, Takeo Kamakura, Suguru Ichihara, Masaki Wakabayashi, Nobuo Tanaka, Yasushi Ishihama
    • Organizer
      62nd ASMS Conference on Mass Spectrometry and Allied Topics
    • Place of Presentation
      Baltimore Convention Center(Baltimore, MD, USA)
    • Year and Date
      2014-06-15 – 2014-06-19
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2017-05-10  

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