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Nature-inspired small molecules for regulation of therapeutically important genes

Research Project

Project/Area Number 26670055
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Drug development chemistry
Research InstitutionKyoto University

Principal Investigator

NAMASIVAYAM Ganesh Pandian  京都大学, 物質-細胞統合システム拠点, 助教 (20625446)

Co-Investigator(Kenkyū-buntansha) SUGIYAMA Hiroshi  京都大学, 理学研究科, 教授 (50183843)
BANDO Toshikazu  京都大学, 理学研究科, 准教授 (20345284)
Project Period (FY) 2014-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2014: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Keywords天然分子を模倣した化合物 / DNAベースの治療 / 遺伝子発現制御 / マルチターゲットな小分子化合物 / エピゲノム
Outline of Final Research Achievements

Synthetic transcriptional activators adept of therapeutic gene modulation could be harnessed for developing strategies to treat some uncured defect-transcriptional machinery associated disorders. We have successfully advanced distinct DNA-based epigenome-modulating small molecules as first-ever bio-inspired genetic switches for activating exclusive cluster of therapeutically important genes including those providing resistance towards ocular disorders and HIV. Also, an `ON` switch for miR-302 familial microRNAs and an `OFF` switch for EVI1 oncogene were developed. Integration of epigenetic modulators on synthetic DNA-based domain effectively activated genes associated pluripotency and cartilage development. Next-generation sequencing studies guided the construction of second-generation genetic switches. Our proof-of-concept studies validate the switchable roles of epigenetic enzymes in gene regulation and provide a molecular basis for developing versatile bioactive ligands.

Report

(2 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • Research Products

    (12 results)

All 2015 2014 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results,  Acknowledgement Compliant: 1 results) Presentation (2 results) (of which Invited: 1 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Integrating epigenetic modulators into NanoScript for enhanced chondrogenesis of stem cells2015

    • Author(s)
      S. Patel, T. Pongkulapa, P. Yin, Ganesh N. Pandian, C. Rathnam, T. Bando, T. Vaijayanthi, H. Sugiyama and K-B. Lee.
    • Journal Title

      Journal of the American Chemical Society (ACS Publications)

      Volume: 137 Issue: 14 Pages: 4598-4601

    • DOI

      10.1021/ja511298n

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Advancing small-molecule-based chemical biology with next-generation sequencing technologies2015

    • Author(s)
      C. Anandhakumar, S. Kizaki, Ganesh N. Pandian, T. Bando, and H. Sugiyama.
    • Journal Title

      ChemBioChem

      Volume: 16 Issue: 1 Pages: 20-38

    • DOI

      10.1002/cbic.201402556

    • NAID

      120006460115

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A synthetic transcriptional activator of genes associated with retina in human dermal fibroblasts2015

    • Author(s)
      J. Syed, C. Anandhakumar, Ganesh N. Pandian, J. Taniguchi, S. Sato, K. Hashiya, G. Kashiwazaki, T. Bando, and H. Sugiyama
    • Journal Title

      ChemBioChem

      Volume: In press Issue: 10 Pages: 1497-1501

    • DOI

      10.1002/cbic.201500140

    • NAID

      120005670900

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of a Small Molecule that Turns `ON` the Pluripotency Gene Circuitry in Human Fibroblasts.2014

    • Author(s)
      Pandian, G, N.; Sato, S.; Anandhakumar, C.; Taniguchi, J.; Takashima, K.; Syed, J; Han, L.; Saha, A.; Bando, T.; Nagase, H.; Sugiyama, H.
    • Journal Title

      ACS Chem. Biol.

      Volume: 9 Issue: 12 Pages: 2729-2736

    • DOI

      10.1021/cb500724t

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Alteration of epigenetic program to recover memory and alleviate neurodegeneration: Prospects of multi-target molecules2014

    • Author(s)
      Ganesh N. Pandian, R. D. Taylor, S. Junetha, A. Saha, C. Anandhakumar, T. Vaijayanthi, and H. Sugiyama.
    • Journal Title

      Biomaterials Science - Royal Society of Chemistry

      Volume: 2 Issue: 8 Pages: 1043-1056

    • DOI

      10.1039/c4bm00068d

    • NAID

      120005625644

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Chemical Modification of a Synthetic Small Molecule Boosts its Biological Efficacy against Pluripotency Genes in Mouse Fibroblast.2014

    • Author(s)
      Saha, A.; Pandian, G. N.; Sato, S.; Taniguchi, J.; Kawamoto, Y.; Hashiya, K.; Bando, T.; Sugiyama, H.
    • Journal Title

      ChemMedChem

      Volume: 9 Issue: 10 Pages: 2374-2380

    • DOI

      10.1002/cmdc.201402117

    • NAID

      120005657928

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Targeted Suppression of EVI1 Oncogene Expression by Sequence-Specific Pyrrole-imidazole Polyamide2014

    • Author(s)
      Junetha, S.; Pandian, G, N.; Sato, S.; Taniguchi, J.; Anandhakumar, C.; Hashiya, K.; Bando, T.; Sugiyama, H.
    • Journal Title

      Chem. Biol.

      Volume: 23 Issue: 10 Pages: 1370-1380

    • DOI

      10.1016/j.chembiol.2014.07.019

    • NAID

      120005512270

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Next-Generation Sequencing Studies Guide the Design of Pyrrole-Imidazole Polyamides with Improved Binding Specifictiy by the Addition of β-alanine.2014

    • Author(s)
      Anandhakumar, C.; Li, Y.; Kizaki, S.; Pandian, G. N.; Hashiya, K.; Bando, T.; Sugiyama, H.
    • Journal Title

      ChemBioChem

      Volume: 15 Issue: 18 Pages: 2647-2651

    • DOI

      10.1002/cbic.201402497

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Presentation] Therapeutic gene modulation using DNA-based transcriptional activators2015

    • Author(s)
      Ganesh N. Pandian, J. Taniguchi, S. Sato, L. Han, S. Junetha, T. Bando, and H. Sugiyama
    • Organizer
      Asian International Symposium -Medicinal Chemistry in The 95th Annual Meeting of The Chemical Society of Japan
    • Place of Presentation
      Funabashi, Chiba, Japan
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Alteration of global gene expression in human somatic cells using DNA-based epigenetic switches2014

    • Author(s)
      Ganesh N. Pandian, J. Taniguchi, S. Junetha, S. Sato, L. Han, A. Saha, C. Anandhakumar, T. Bando, and H. Sugiyama
    • Organizer
      ISSCR Regional Forum - Global control of stem cells
    • Place of Presentation
      Biopolis, Singapore
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Book] Chapter 2 Synthetic strategies to identify and regulate noncoding RNAs in Long Noncoding RNAs: Structures and Functions2015

    • Author(s)
      Ganesh N. Pandian, J. Syed, and H. Sugiyama
    • Total Pages
      224
    • Publisher
      Springer Japan, Editors: Kurokawa, Riki
    • Related Report
      2014 Annual Research Report
  • [Remarks] INSIDE COVER in Biomaterials Science

    • URL

      http://pubs.rsc.org/en/content/articlelanding/2014/bm/c4bm90023e#!divAbstract

    • Related Report
      2014 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2016-06-03  

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