• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Development of genetic code restoration by using artificial RNA editing

Research Project

Project/Area Number 26670167
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Human genetics
Research InstitutionJapan Advanced Institute of Science and Technology

Principal Investigator

TSUKAHARA Toshifumi  北陸先端科学技術大学院大学, マテリアルサイエンス研究科, 教授 (60207339)

Co-Investigator(Renkei-kenkyūsha) TATENO MASARU  兵庫県立大学, 院・生命理学研究科, 教授 (40291926)
SUZUKI HITOSHI  北陸先端科学技術大学院大学, マテリアルサイエンス研究科, 特任助教 (00447690)
Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsDeaminase / RNA editing / MS2 / 活性ドメイン / guide RNA / 遺伝子修復 / デアミナーゼ / 活性部位 / ガイドRNA
Outline of Final Research Achievements

To imitate RNA editing system for artificial and site-specific deamination of nucleic acid toward base-substitutions in vivo, we connected the active domain of ADAR1 with a guide RNA by using MS2 system. The nonsense mutated EGFP was used as a reporter gene. These 3 genes were transiently transfected into HEK293 cells at once. We observed green fluorescent cells in which parts of mutated EGFP mRNAs were restored in vivo. The genetic code restoration was confirmed by RT-PCR-RFLP and sequencing, respectively. We also compared efficiencies of RNA restorations by the site-specific deamination among ADAR family isoforms.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (6 results)

All 2016 2015 2014

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 5 results,  Acknowledgement Compliant: 5 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Chemical RNA Editing for Genetic Restoration: The Relationship between the Structure and Deamination Efficiency of Carboxyvinyldeoxyuridine Oligodeoxynucleotides2016

    • Author(s)
      Vu Thi Luyen, Nguyen Thi Kim Thanh, Md Thoufic Anam Azad, Hitoshi Suzuki, and Toshifumi Tsukahara
    • Journal Title

      Chemical Biology & Drug Design

      Volume: 87 Issue: 4 Pages: 583-593

    • DOI

      10.1111/cbdd.12693

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Changing Blue Fluorescent Protein to Green Fluorescent Protein Using Chemical RNA Editing as a Novel Strategy in Genetic Restoration2015

    • Author(s)
      Luyen T. Vu, Thanh T. K. Nguyen, Shafiul Alam, Takashi Sakamoto, Kenzo Fujimoto, Hitoshi Suzuki and Toshifumi Tsukahara
    • Journal Title

      Chemical Biology & Drug Design

      Volume: 86 Issue: 5 Pages: 1242-1252

    • DOI

      10.1111/cbdd.12592

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Computational extraction of a neural molecular network through alternative splicing2014

    • Author(s)
      Alam S, Phan HT, Okazaki M, Takagi M, Kawahara K, Tsukahara T, Suzuki H
    • Journal Title

      BMC Res. Notes

      Volume: 7 Issue: 1 Pages: 934-934

    • DOI

      10.1186/1756-0500-7-934

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Alternative splicing regulation of APP exon 7 by RBFox proteins2014

    • Author(s)
      Alam S, Suzuki H, Tsukahara T
    • Journal Title

      Neurochem. Int.

      Volume: 78 Pages: 7-17

    • DOI

      10.1016/j.neuint.2014.08.001

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A View of Pre-mRNA Splicing from RNase R Resistant RNAs2014

    • Author(s)
      Suzuki H, Tsukahara T
    • Journal Title

      Int. J. Mol. Sci.

      Volume: 15 Issue: 6 Pages: 9331-9342

    • DOI

      10.3390/ijms15069331

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Patent(Industrial Property Rights)] 塩基置換手段をスクリーニングする方法2015

    • Inventor(s)
      塚原俊文、藤本健造
    • Industrial Property Rights Holder
      北陸先端科学技術大学院大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2015-085414
    • Filing Date
      2015-04-17
    • Related Report
      2015 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2017-05-10  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi