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Development of a novel assay for detecting chromosomal translocation

Research Project

Project/Area Number 26670549
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Radiation science
Research InstitutionGunma University

Principal Investigator

Shibata Atsushi  群馬大学, 先端科学研究指導者育成ユニット, 助教 (30707633)

Research Collaborator Yamauchi Motohiro  長崎大学, 原爆後障害医療研究所, 助教
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsDNA修復 / 染色体転座 / ゲノム不安定性
Outline of Final Research Achievements

Among the several IR-induced mutations, chromosomal translocation is one of the critical mutations, however, the conventional assay requires a highly-trained skill. Here, we aim to establish a new method to measure chromosomal translocation by using a site specific endonuclease, I-Ppo1. HT1080 cells, which express an inducible I-Ppo1 vector, were used in this study. I-PpoI was induced by 4-OHT treatment. The efficiency of translocation was accessed by PCR using primer sets between rDNA and DAB1 locus, however, an obvious signal was not detected by the primer sets. By considering other data, we concluded that more efficient digestion is required to detect I-PpoI induced translocation.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (40 results)

All 2017 2016 2015 2014 Other

All Journal Article (12 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 12 results,  Acknowledgement Compliant: 6 results,  Open Access: 7 results) Presentation (23 results) (of which Int'l Joint Research: 5 results,  Invited: 12 results) Remarks (5 results)

  • [Journal Article] Regulation of pairing between broken DNA-containing chromatin regions by Ku80, DNA-PKcs, ATM, and 53BP12017

    • Author(s)
      Motohiro Yamauchi, Atsushi Shibata, Keiji Suzuki, Masatoshi Suzuki, Atsuko Niimi, Hisayoshi Kondo, Miwa Miura, Miyako Hirakawa, Keiko Tsujita, Shunichi Yamashita, Naoki Matsuda
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 41812-41812

    • DOI

      10.1038/srep41812

    • NAID

      120006987560

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] BRCA1 directs the repair pathway to homologous recombination by promoting 53BP1 dephosphorylation2017

    • Author(s)
      Mayu Isono, Atsuko Niimi, Takahiro Oike, Yoshihiko Hagiwara, Hiro Sato, Ryota Sekine, Yukari Yoshida, Shin-Ya Isobe, Chikashi Obuse, Ryotaro Nishi, Elena Petricci, Shinichiro Nakada, Takashi Nakano, Atsushi Shibata
    • Journal Title

      Cell Reports

      Volume: 18 Issue: 2 Pages: 520-532

    • DOI

      10.1016/j.celrep.2016.12.042

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Identification of DNA double strand breaks at chromosome boundaries along the track of particle irradiation2016

    • Author(s)
      Atsuko Niimi, Motohiro Yamauchi, Siripan Limsirichaikul, Ryota Sekine, Takahiro Oike, Hiro Sato, Keiji Suzuki, Kathryn D. Held, Takashi Nakano, Atsushi Shibata
    • Journal Title

      Genes Chromosomes & Cancer

      Volume: 55 Issue: 8 Pages: 650-660

    • DOI

      10.1002/gcc.22367

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Visualization of complex DNA double-strand breaks in a tumor treated with carbon ion radiotherapy2016

    • Author(s)
      Takahiro Oike, Atsuko Niimi, Noriyuki Okonogi, Kazutoshi Murata, Akihiko Matsumura, Shin-Ei Noda, Daijiro Kobayashi, Mototaro Iwanaga, Keisuke Tsuchida, Tatsuaki Kanai, Tatsuya Ohno, Atsushi Shibata, Takashi Nakano
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 22275-22275

    • DOI

      10.1038/srep22275

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Carbon-ion beams effectively induce growth inhibition and apoptosis in human neural stem cells compared with glioblastoma A172 cells.2015

    • Author(s)
      Isono M, Yoshida Y, Takahashi A, Oike T, Shibata A, Kubota Y, Kanai T, Ohno T, Nakano T.
    • Journal Title

      J Radiat Res.

      Volume: 56 Issue: 5 Pages: 856-861

    • DOI

      10.1093/jrr/rrv033

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The EGFR mutation status affects the relative biological effectiveness of carbon-ion beams in non-small cell lung carcinoma cells.2015

    • Author(s)
      Amornwichet N, Oike T, Shibata A, Nirodi CS, Ogiwara H, Makino H, Kimura Y, Hirota Y, Isono M, Yoshida Y, Ohno T, Kohno T, Nakano T.
    • Journal Title

      Sci Rep.

      Volume: 11 Issue: 1 Pages: 11305-11305

    • DOI

      10.1038/srep11305

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Other Determinants of Sensitivity2015

    • Author(s)
      Naoyuki Okita and Atsushi Shibata
    • Journal Title

      PARP Inhibitors for Cancer Therapy

      Volume: 83 Pages: 363-379

    • DOI

      10.1007/978-3-319-14151-0_15

    • ISBN
      9783319141503, 9783319141510
    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] SETDB1, HP1 and SUV39 promote repositioning of 53BP1 to extend resection during homologous recombination in G2 cells2015

    • Author(s)
      Meryem Alagoz, Yoko Katsuki, Hideaki Ogiwara, Tomoo Ogi, Atsushi Shibata, Andreas Kakarougkas, and Penny Jeggo
    • Journal Title

      Nucleic Acids Research

      Volume: 43(16) Issue: 16 Pages: 7931-7944

    • DOI

      10.1093/nar/gkv722

    • NAID

      120006986903

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] RAD51 and BRCA2 promote oncolytic adenovirus type 5 activity in ovarian cancer2015

    • Author(s)
      Laura A. Tookman, Ashley K. Browne, Claire M. Connell, Gemma Bridge, Carin K. Ingemarsdotter, Suzanne Dowson, Atsushi Shibata, Michelle Lockley, Sarah A. Martin, and Iain A. McNeish.
    • Journal Title

      Molecular Cancer Research

      Volume: 14(1): Pages: 44-55

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Pre-exposure to ionizing radiation stimulates DNA double strand break end resection, promoting the use of homologous recombination repair2015

    • Author(s)
      Nakako Izumi Nakajima, Yoshihiko Hagiwara, Takahiro Oike, Ryuichi Okayasu, Takeshi Murakami, Takashi Nakano, and Atsushi Shibata
    • Journal Title

      PLOS ONE

      Volume: 10 Issue: 3 Pages: e0122582-e0122582

    • DOI

      10.1371/journal.pone.0122582

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] DNA double-strand break repair in a cellular context.2014

    • Author(s)
      Atsushi Shibata, Penny A. Jeggo
    • Journal Title

      Clin Oncol (R Coll Radiol)

      Volume: 26 Issue: 5 Pages: 243-249

    • DOI

      10.1016/j.clon.2014.02.004

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Carbon-Ion Beam Irradiation Kills X-Ray-Resistant p53-Null Cancer Cells by Inducing Mitotic Catastrophe2014

    • Author(s)
      Amornwichet N, Oike T, Shibata A, Ogiwara H, Tsuchiya N, Yamauchi M, Saitoh Y, Sekine R, Isono M, Yoshida Y, Ohno T, Kohno T, Nakano T
    • Journal Title

      PLoS One

      Volume: 9 Issue: 12 Pages: e115121-e115121

    • DOI

      10.1371/journal.pone.0115121

    • NAID

      120006986291

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] DNA repair pathway regulates PD-L1 expression in cancer cells.2017

    • Author(s)
      柴田淳史
    • Organizer
      International Symposium on Immune Diversity and Cancer Therapy Kobe 2017
    • Place of Presentation
      神戸ポートピアホテル(兵庫県・神戸市)
    • Year and Date
      2017-01-26
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DNA二本鎖切断修復経路の選択性を担う時空間的制御機構2016

    • Author(s)
      柴田淳史
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県・横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] 重粒子線特異的なDNA 損傷の可視化と修復経路への影響2016

    • Author(s)
      柴田淳史
    • Organizer
      放射線医学総合研究の第2回放射線がん生物研究セミナー
    • Place of Presentation
      放射線医学総合研究所(千葉県・千葉市)
    • Year and Date
      2016-11-15
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] シンポジウム「多彩な細胞応答を制御する DNA 修復研究の最先端」(座長)2016

    • Author(s)
      柴田淳史
    • Organizer
      日本放射線影響学会第59回大会
    • Place of Presentation
      JMSアステールプラザ(広島県・広島市)
    • Year and Date
      2016-10-26
    • Related Report
      2016 Annual Research Report
  • [Presentation] DNA二本鎖切断修復経路を制御するDNA end resectionの多段階調節機2016

    • Author(s)
      柴田淳史
    • Organizer
      遺伝研研究集会「生物ゲノム安定維持の分子機構」
    • Place of Presentation
      国立遺伝学研究所(静岡県・三島市)
    • Year and Date
      2016-10-24
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] BRCA1 directs the repair pathway to homologous recombination by promoting 53BP1 dephosphorylation2016

    • Author(s)
      柴田淳史
    • Organizer
      The 32th International Symposium “Growing Edge of Radiation Biology, from principles to applications”
    • Place of Presentation
      ホテルコープイン京都(京都府・京都市)
    • Year and Date
      2016-09-01
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] BRCA1 directs the repair pathway to homologous recombination by promoting 53BP1 dephosphorylation.2016

    • Author(s)
      柴田淳史
    • Organizer
      Abcam Conference “Mechanisms of Recombination”
    • Place of Presentation
      アリカンテ(スペイン)
    • Year and Date
      2016-05-19
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] AnalysisofclusterandDNAdoublestrandbreakafterheavyionirradiationusinghighresolutionmicroscopy2016

    • Author(s)
      柴田淳史
    • Organizer
      14th International Workshop on Radiation Damage to DNA
    • Place of Presentation
      メルボルン(オーストラリア)
    • Year and Date
      2016-03-21
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] DNA修復研究からの放射線治療発展へのアプローチ2016

    • Author(s)
      柴田淳史
    • Organizer
      .茨城大学理学部公開シンポジウム「第9回 Quantum Medicine 研究会」
    • Place of Presentation
      茨城大学理学部(茨城県・水戸市)
    • Year and Date
      2016-03-13
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] DNA二本鎖切断修復経路を決定する時空間的制御機構の解明2015

    • Author(s)
      柴田淳史
    • Organizer
      放射線医学総合研究所 第7回次世代放射線治療研究セミナー・放医研研究会共催「若手研究者によるDNA修復の最先端」
    • Place of Presentation
      放射線医学総合研究所(千葉県・千葉市)
    • Year and Date
      2015-12-18
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] 多様なDNA損傷応答の統合制御機構2015 ~ゲノム不安定性の病態解明研究~2015

    • Author(s)
      柴田淳史
    • Organizer
      第38回 日本分子生物学会・第88回日本生化学会 合同大会
    • Place of Presentation
      神戸ポートピアホテル 本館 B1F 偕楽1(兵庫県・神戸市)
    • Year and Date
      2015-12-03
    • Related Report
      2015 Research-status Report
  • [Presentation] Understanding the molecular mechanism for developing a novel treatment strategy in radiotherapy2015

    • Author(s)
      柴田淳史
    • Organizer
      日本放射線腫瘍学会第28回大会
    • Place of Presentation
      前橋商工会議所 サクラ(群馬県・前橋市)
    • Year and Date
      2015-11-19
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] BRCA1によるDNA end resectionの調節機構の解明2015

    • Author(s)
      柴田淳史
    • Organizer
      国立遺伝学研究所「染色体DNAの安定維持の分子メカニズム」
    • Place of Presentation
      国立遺伝学研究所・講堂(静岡県・三島市))
    • Year and Date
      2015-10-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] District regulation of DNA double strand break resection after heavy ion irradiation2015

    • Author(s)
      柴田淳史
    • Organizer
      The 2015 IMB conference, DNA Repair & Genome Stability in a Chromatin Environment
    • Place of Presentation
      マインツ(ドイツ)
    • Year and Date
      2015-06-04
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Initiation of homologous recombination repair by MRE11 nuclease activities2015

    • Author(s)
      Atsushi Shibata
    • Organizer
      Genomic Instability and DNA Repair (X4)
    • Place of Presentation
      Whistler Conference Centre (Canada, Whistler, British Columbia)
    • Year and Date
      2015-03-04
    • Related Report
      2014 Research-status Report
  • [Presentation] DNA二本鎖切断修復経路を決定する分子メカニズム2014

    • Author(s)
      柴田淳史
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県・横浜市)
    • Year and Date
      2014-11-27
    • Related Report
      2014 Research-status Report
  • [Presentation] DNA二本鎖切断発生後の相同組換え修復開始メカニズム2014

    • Author(s)
      柴田淳史
    • Organizer
      国立遺伝学研究所・研究集会「染色体DNAの安定維持の分子メカニズム」
    • Place of Presentation
      国立遺伝学研究所・講堂(静岡県・三島市)
    • Year and Date
      2014-11-06
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] DNA二本鎖切断修復経路を決定する分子メカニズム2014

    • Author(s)
      柴田淳史
    • Organizer
      日本放射線影響学会第57回大会
    • Place of Presentation
      かごしま県民交流センター(鹿児島県・鹿児島市)
    • Year and Date
      2014-10-03
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 放射線誘発DNA二本鎖切断発生後の修復経路決定メカニズム2014

    • Author(s)
      柴田淳史
    • Organizer
      人材育成事業第1回集中講義「放射線の生体効果:発ガン誘導と抵抗性獲得メカニズム」
    • Place of Presentation
      京都大学原子炉実験所 会議室(大阪府・泉南郡)
    • Year and Date
      2014-08-10
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] DNA二本鎖切断修復経路決定に関わる分子機構の解明2014

    • Author(s)
      柴田淳史
    • Organizer
      Genome Damage Network Workshop in Tohoku University 2014
    • Place of Presentation
      東北大学 加齢医学研究所(宮城県・仙台市)
    • Year and Date
      2014-06-05 – 2014-06-06
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Initiation of homologous recombination repair by MRE11 nuclease activities2014

    • Author(s)
      Atsushi Shibata
    • Organizer
      Mechanisms of Recombination:50th Anniversary Meeting of the Holliday Model
    • Place of Presentation
      Melia Alicante (Spain, Alicante)
    • Year and Date
      2014-05-19 – 2014-05-23
    • Related Report
      2014 Research-status Report
  • [Presentation] 放射線照射後のDNA二本鎖切断修復とチェックポイントシグナル研究2014

    • Author(s)
      柴田淳史
    • Organizer
      第18回NRGIC重点セミナー/第18回原研研究集会 がんプロフェッショナル養成基盤推進プラン講演会
    • Place of Presentation
      長崎大学(長崎県・長崎市)
    • Year and Date
      2014-04-25
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 欠失及び転座を導くG1(G0)期細胞のDSB end resection機構2014

    • Author(s)
      柴田淳史
    • Organizer
      浜名湖ワークショップ
    • Place of Presentation
      浜名湖弁天リゾート ジ・オーシャン(静岡県・浜松市)
    • Year and Date
      2014-04-03 – 2014-04-04
    • Related Report
      2014 Research-status Report
  • [Remarks] DNA修復研究 柴田研究室

    • URL

      http://shibatalab.com/

    • Related Report
      2016 Annual Research Report
  • [Remarks] SHIBATA LAB

    • URL

      http://shibatalab.com/english/

    • Related Report
      2016 Annual Research Report
  • [Remarks] DNA修復研究 柴田研究室

    • URL

      http://shibatalab.com

    • Related Report
      2015 Research-status Report 2014 Research-status Report
  • [Remarks] SHIBATA LAB

    • URL

      http://shibatalab.com/english

    • Related Report
      2015 Research-status Report 2014 Research-status Report
  • [Remarks] 先端科学研究指導者育成ユニット

    • URL

      http://asrldu.dept.med.gunma-u.ac.jp

    • Related Report
      2015 Research-status Report 2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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