Regulatory DNA conserved between Phyla
| Project/Area Number |
26700030
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| Research Category |
Grant-in-Aid for Young Scientists (A)
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| Allocation Type | Partial Multi-year Fund |
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| Research Field |
Life / Health / Medical informatics
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| Research Institution | National Institute of Advanced Industrial Science and Technology |
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Principal Investigator |
Frith Martin 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 上級主任研究員 (40462832)
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| Project Period (FY) |
2014-04-01 – 2018-03-31
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| Project Status |
Completed (Fiscal Year 2017)
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| Budget Amount *help |
¥18,850,000 (Direct Cost: ¥14,500,000、Indirect Cost: ¥4,350,000)
Fiscal Year 2016: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2015: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2014: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
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| Keywords | genome / orthology / alignment / probability / substitution / insertion / deletion / バイオインフォマティクス / 生体情報学 / 比較ゲノム |
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| Outline of Final Research Achievements |
This year, several direct and indirect research outcomes were finalized and published. A survey of sequence rearrangements in human DNA was published in NAR. A simplified "child table" algorithm, for finding similar sequences, was published in IEEE/ACM TCBB. A method for detecting genome variations was published in BMC Medical Genomics. Our method for considering DNA neighbor-base preferences, which improves bacterial strain discrimination, was published in BMC Bioinformatics. Our analysis methods are proving useful for recent "long" DNA-read data.
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Report
(5 results)
Research Products
(15 results)
