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Development of a new infrared spectroscopic technique for elucidating molecular mechanisms of membrane proteins

Research Project

Project/Area Number 26708002
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Physical chemistry
Research InstitutionInstitute for Molecular Science

Principal Investigator

FURUTANI Yuji  分子科学研究所, 生命・錯体分子科学研究領域, 准教授 (80432285)

Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥24,050,000 (Direct Cost: ¥18,500,000、Indirect Cost: ¥5,550,000)
Fiscal Year 2017: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2016: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2015: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2014: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Keywords赤外分光法 / イオンチャネル / カリウムチャネル / 膜タンパク質 / イオン-タンパク質相互作用 / 生物物理
Outline of Final Research Achievements

For elucidating molecular mechanisms underlying functions of membrane proteins such as ion channels and transporters, I engaged in development of a new infrared spectroscopic technique which enables quantitative measurement of interactions between protein and ion or substrate and time-resolved measurement of structural changes of protein upon their functioning. Slow or fast buffer-exchange system was incorporated in an infrared spectrometer with a configuration of attenuated total reflection. I succeeded to identify an infrared absorption band as “molecular fingerprint” for the ion selectivity filter which realizes high selectivity for potassium ions in potassium channel, and to measure changes of the infrared band reflecting structural changes of the selectivity filter upon binding of potassium ions in time-resolved manner.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (54 results)

All 2018 2017 2016 2015 2014 Other

All Int'l Joint Research (5 results) Journal Article (20 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 19 results,  Open Access: 8 results,  Acknowledgement Compliant: 2 results) Presentation (22 results) (of which Int'l Joint Research: 6 results,  Invited: 16 results) Book (2 results) Remarks (5 results)

  • [Int'l Joint Research] バレンシア大学(スペイン)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] トロント大学(カナダ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] バレンシア大学(スペイン)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] トロント大学(カナダ)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] バレンシア大学(スペイン)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] "In situ" Observation of Role of Chloride Ion Binding to Monkey Green Sensitive Visual Pigment by ATR-FTIR Spectroscopy2018

    • Author(s)
      Kota Katayama, Yuji Furutani, Masayo Iwaki, Tetsuya Fukuda, Hiroo Imai, and Hideki Kandori
    • Journal Title

      Phys. Chem. Chem. Phys.

      Volume: 20 Issue: 5 Pages: 3381-3387

    • DOI

      10.1039/c7cp07277e

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] PDMS-Based Microfluidic Device for Infrared-Transmission Spectro-electrochemistry2018

    • Author(s)
      Akkapol Suea-Ngam, Monpichar Srisa-Art, and Yuji Furutani
    • Journal Title

      Bull. Chem. Soc. Jpn.

      Volume: 印刷中 Issue: 5 Pages: 728-734

    • DOI

      10.1246/bcsj.20170430

    • NAID

      130006734138

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Structural properties determining low K+affinity of the selectivity filter in the TWIK1 K+channel2018

    • Author(s)
      Tsukamoto Hisao、Higashi Masahiro、Motoki Hideyoshi、Watanabe Hiroki、Ganser Christian、Nakajo Koichi、Kubo Yoshihiro、Uchihashi Takayuki、Furutani Yuji
    • Journal Title

      Journal of Biological Chemistry

      Volume: 293 Issue: 18 Pages: 6969-6984

    • DOI

      10.1074/jbc.ra118.001817

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ion-protein interactions of a potassium ion channel studied by attenuated total reflection Fourier transform infrared spectroscopy2018

    • Author(s)
      Yuji Furutani
    • Journal Title

      Biophys. Rev.

      Volume: 印刷中 Issue: 2 Pages: 235-239

    • DOI

      10.1007/s12551-017-0337-8

    • Related Report
      2017 Annual Research Report
  • [Journal Article] A ciliary opsin in the brain of a marine annelid zooplankton is ultraviolet-sensitive, and the sensitivity is tuned by a single amino acid residue.2017

    • Author(s)
      Tsukamoto H, Chen IS, Kubo Y, Furutani Y
    • Journal Title

      J Biol Chem

      Volume: 292 Issue: 31 Pages: 12971-12980

    • DOI

      10.1074/jbc.m117.793539

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Impact of the Polymer Chain Length on the Catalytic Activity of Poly(N-vinyl-2-pyrrolidone)-supported Gold Nanoclusters2017

    • Author(s)
      Haesuwannakij Setsiri、Kimura Tetsunari、Furutani Yuji、Okumura Kazu、Kokubo Ken、Sakata Takao、Yasuda Hidehiro、Yakiyama Yumi、Sakurai Hidehiro
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1

    • DOI

      10.1038/s41598-017-10165-9

    • NAID

      120006363291

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural insights into the nucleotide base specificity of P2X receptors.2017

    • Author(s)
      Kasuya G, Fujiwara Y, Tsukamoto H, Morinaga S, Ryu S, Touhara K, Ishitani R, Furutani Y, Hattori M, Nureki O.
    • Journal Title

      Sci Rep.

      Volume: 7 Issue: 1 Pages: 45208-45208

    • DOI

      10.1038/srep45208

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 光誘起赤外差分光法による微生物型ロドプシンのイオン輸送機構の研究2016

    • Author(s)
      古谷祐詞
    • Journal Title

      日本レーザー医学会誌

      Volume: 36 Pages: 460-465

    • NAID

      130005966857

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Simple and Rapid Fabrication of PDMS Microfluidic Devices Compatible with FTIR Microspectroscopy2016

    • Author(s)
      Monpichar Srisa-Art and Yuji Furutani
    • Journal Title

      Bull. Chem. Soc. Jpn.

      Volume: 89 Issue: 2 Pages: 195-202

    • DOI

      10.1246/bcsj.20150357

    • NAID

      130005125593

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Live-cell single-molecule imaging of the cytokine receptor MPL for analysis of dynamic dimerization2016

    • Author(s)
      Akihiko Sakamoto, Takashi Tsukamoto, Yuji Furutani, Yuki Sudo, Kazuyuki Shimada, Akihiro Tomita, Hitoshi Kiyoi, Takashi Kato and Takashi Funatsu
    • Journal Title

      J. Mol. Cell Biol.

      Volume: 印刷中

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chimeras of Channelrhodopsin-1 and -2 from Chlamydomonas reinhardtii Exhibit Distinctive Light-induced Structural Changes from Channelrhodopsin-2.2015

    • Author(s)
      Asumi Inaguma, Hisao Tsukamoto, Hideaki E. Kato, Tetsunari Kimura, Toru Ishizuka, Satomi Oishi, Hiromu Yawo, Osamu Nureki, Yuji Furutani
    • Journal Title

      J. Biol. Chem.

      Volume: 290 Issue: 18 Pages: 11623-11634

    • DOI

      10.1074/jbc.m115.642256

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Specific interactions between alkali metal cations and the KcsA channel studied using ATR-FTIR spectroscopy2015

    • Author(s)
      Y. Furutani, H. Shimizu, Y. Asai, S. Oiki, H. Kndori
    • Journal Title

      Biophysics and Physicobiology

      Volume: 12 Issue: 0 Pages: 37-45

    • DOI

      10.2142/biophysico.12.0_37

    • NAID

      130005098800

    • ISSN
      2189-4779
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] New insights into metal ion-crown ether complexes revealed by SEIRA spectroscopy2015

    • Author(s)
      Yoshiya Inokuchi, Takayuki Ebata, Toshiaki Ikeda, Takeharu Haino, Tetsunari Kimura, Hao Guo, Yuji Furutani
    • Journal Title

      New Journal of Chemistry

      Volume: 39 Issue: 11 Pages: 8673-8680

    • DOI

      10.1039/c5nj01787d

    • NAID

      120005829506

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Retinal attachment instability is diversified among mammalian melanopsins2015

    • Author(s)
      H. Tsukamoto, Y. Kubo, D.L. Farrens, M. Koyanagi, A. Terakita, Y. Furutani
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 290 Issue: 45 Pages: 27176-27187

    • DOI

      10.1074/jbc.m115.666305

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Infrared spectroscopic studies on the V-ATPase2015

    • Author(s)
      H. Kandori*, Y. Furutani, T. Murata
    • Journal Title

      Biochim. Biophys Acta

      Volume: 1847 Issue: 1 Pages: 134-141

    • DOI

      10.1016/j.bbabio.2014.07.020

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Self-assembly of the chaperonin GroEL nanocage induced at submicellar detergent2014

    • Author(s)
      Jin Chen, Hisashi Yagi, Yuji Furutani, Takashi Nakamura, Asumi Inaguma, Hao Guo, Yan Kong, Yuji Goto
    • Journal Title

      Scientific Reports

      Volume: 4 Issue: 1 Pages: 5614-5614

    • DOI

      10.1038/srep05614

    • NAID

      120006557631

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Attenuated total reflectance spectroscopy with chirped-pulse upconversion2014

    • Author(s)
      H. Shirai, C. Duchesne, Y. Furutani, and T. Fuji
    • Journal Title

      Optics Express

      Volume: 22 Issue: 24 Pages: 29611-29616

    • DOI

      10.1364/oe.22.029611

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] "Hydrogen-bonding changes of internal water molecules upon the actions of microbial rhodopsins studied by FTIR spectroscopy "2014

    • Author(s)
      Y. Furutani, H. Kandori
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1837 Issue: 5 Pages: 598-605

    • DOI

      10.1016/j.bbabio.2013.09.004

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 急速緩衝液交換法による時間分解全反射赤外分光法の開発2014

    • Author(s)
      古谷祐詞、木村哲就、岡本基土
    • Journal Title

      生物物理

      Volume: 54 Pages: 272-275

    • NAID

      130004693957

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 赤外分光法による膜タンパク質の分子機構研究2014

    • Author(s)
      古谷祐詞
    • Journal Title

      Molecular Science

      Volume: 8

    • NAID

      130004688035

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Presentation] Interactions of potassium ion channels with alkali metal cations and their relevance to the K+ selectivity studied by infrared spectroscopy2018

    • Author(s)
      Yuji Furutani
    • Organizer
      Mini international workshop “Interhierarchical understanding of materials and life through molecular observation”
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Time-resolved FTIR spectroscopy on microbial rhodopsins and other membrane proteins2017

    • Author(s)
      Yuji Furutani
    • Organizer
      International Symposium on Biophysics of Rhodopsins
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Application of infrared spectroscopy to study the ion selectivity of potassium ion channels2017

    • Author(s)
      Yuji Furutani
    • Organizer
      The 6th Asian Spectroscopy Conference
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 全反射赤外分光法によるカリウムチャネルTWIK-1のイオン選択フィルター構造とアルカリ金属イオンとの相互作用解析2017

    • Author(s)
      塚本寿夫、中條浩一、久保義弘、古谷祐詞
    • Organizer
      第11回分子科学討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Amide I vibrations could be fingerprints of ion-protein interactions of potassium ion channels with alkali metal cations2016

    • Author(s)
      Yuji Furutani and Hisao Tsukamoto
    • Organizer
      The 9th Korea-Japan Seminars on Biomolecular Sciences: Experiments and Simulations
    • Place of Presentation
      Commodore Hotel, Gyeongju, Korea
    • Year and Date
      2016-11-16
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] PDMSマイクロ流路を用いた電気化学計測と可視・赤外分光法の融合的アプローチ2016

    • Author(s)
      古谷祐詞、Akkapol Suea-Ngam
    • Organizer
      第10回分子科学討論会
    • Place of Presentation
      神戸ファッションマート(兵庫県神戸市)
    • Year and Date
      2016-09-15
    • Related Report
      2016 Annual Research Report
  • [Presentation] オプトジェネティクスで活躍する微生物型ロドプシンの分子機構研究2016

    • Author(s)
      古谷祐詞
    • Organizer
      生化学若い研究者の会 第56回生命科学夏の学校
    • Place of Presentation
      旅館かつら(宮城県白石市)
    • Year and Date
      2016-08-26
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 赤外分光計測によるカリウムチャネルのイオン選択機構の研究2016

    • Author(s)
      古谷祐詞
    • Organizer
      第1回イオンチャネル研究会~チャネルどんたく~
    • Place of Presentation
      福岡大学病院(福岡県福岡市)
    • Year and Date
      2016-07-07
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Molecular Mechanisms of Retinal Proteins with Involvement of Water Molecules Studied by Light-Induced Difference Infrared Spectroscopy2016

    • Author(s)
      Yuji Furutani
    • Organizer
      26th IUPAC International Symposium on Photochemistry
    • Place of Presentation
      Osaka City Central Public Hall (Osaka, Osaka Pref.)
    • Year and Date
      2016-04-05
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Ion-Protein Interactions between a Potassium Channel and Alkali Metal Cations Studied by ATR-FTIR Spectroscopy2016

    • Author(s)
      Yuji Furutani
    • Organizer
      60th Annual Meeting of Biophysical Society (selected as a Platform Talk)
    • Place of Presentation
      Los Angeles, California, USA
    • Year and Date
      2016-03-01
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 時間分解赤外分光法を用いた熱耐性ロドプシンTRの光反応解析2016

    • Author(s)
      黒井邦巧、塚本卓、本田尚也、須藤雄気、古谷祐詞
    • Organizer
      日本生物物理学会中部支部講演会
    • Place of Presentation
      愛知県岡崎市(岡崎コンファレンスセンター)
    • Year and Date
      2016-02-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] The molecular mechanisms of ion channel proteins studied by stimulus-induced difference FT-IR spectroscopy2016

    • Author(s)
      Yuji Furutani
    • Organizer
      Pure and Applied Chemistry International Conference (PACCON) 2016, The 4th CU-IMS Symposium
    • Place of Presentation
      Bangkok, Thailand
    • Year and Date
      2016-02-10
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 時間分解赤外分光計測による好熱性ロドプシンTRの光反応解析2015

    • Author(s)
      黒井邦巧、塚本卓、本田尚也、須藤雄気、古谷祐詞
    • Organizer
      第9回分子科学討論会
    • Place of Presentation
      東京都目黒区大岡山(東京工業大学)
    • Year and Date
      2015-09-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] 赤外分光法によるレチナールタンパク質の機能発現機構の解明2015

    • Author(s)
      古谷祐詞
    • Organizer
      第29回カロテノイド研究談話会
    • Place of Presentation
      東京都八王子市(首都大学東京)
    • Year and Date
      2015-09-04
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Infrared Difference Spectroscopy is a Key Technique for Deciphering the Molecular Mechanisms of Ion Pump and Channel Proteins2015

    • Author(s)
      Yuji Furutani
    • Organizer
      OIIB (Okazaki Institute for Integrative Bioscience) Summer School 2015
    • Place of Presentation
      愛知県岡崎市(岡崎コンファレンスセンター)
    • Year and Date
      2015-08-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] イオンチャネルの分子機構解明への赤外分光解析による挑戦2015

    • Author(s)
      古谷祐詞
    • Organizer
      分子研研究会「膜タンパク質内部のプロトン透過を考える」
    • Place of Presentation
      愛知県岡崎市(岡崎コンファレンスセンター)
    • Year and Date
      2015-04-20
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Structural Changes of Membrane Proteins Studied by Difference FTIR Spectroscopy; Microbial Rhodopsins and Potassium Ion Channels2014

    • Author(s)
      Yuji Furutani
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      Nagahama Royal Hotel, Nagahama, Shiga
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] ATR-FTIR spectroscopic analyses of interaction modes underlying unique ion selectivity of a two-pore domain potassium channel TWIK-12014

    • Author(s)
      Hisao Tsukamoto, Koichi Nakajo, Yoshihiro Kubo, Yuji Furutani
    • Organizer
      The 52nd Annual Meeting of the Biophysical Society of Japan (BSJ2014)
    • Place of Presentation
      Sapporo Convention Center, Sapporo, Hokkaido
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 赤外分光法による膜タンパク質の動作機構研究2014

    • Author(s)
      古谷祐詞
    • Organizer
      第8回分子科学討論会 奨励賞受賞講演
    • Place of Presentation
      広島県東広島市(広島大学)
    • Year and Date
      2014-09-24
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 赤外分光法による膜タンパク質研究2014

    • Author(s)
      古谷祐詞
    • Organizer
      岡山大学大学院医歯薬学総合研究科 第3回生体物理化学セミナー
    • Place of Presentation
      岡山県岡山市(岡山大学)
    • Year and Date
      2014-09-19
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 赤外分光法による膜タンパク質の動作機構研究2014

    • Author(s)
      古谷祐詞
    • Organizer
      大阪大学生命機能研究科 FBSコロキウム
    • Place of Presentation
      大阪府吹田市(大阪大学)
    • Year and Date
      2014-06-18
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Protein-ion interactions of membrane proteins studied by Fourier-transform infrared spectroscopy2014

    • Author(s)
      Yuji Furutani
    • Organizer
      18th East Asian Workshop on Chemical Dynamics
    • Place of Presentation
      Busan, Republic of Korea
    • Year and Date
      2014-05-19 – 2014-05-21
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Book] 光と生命の事典(「75 菌類のロドプシン」、第3章光の情報利用 3.1 光環境応答)2016

    • Author(s)
      古谷祐詞
    • Total Pages
      422
    • Publisher
      朝倉書店
    • Related Report
      2015 Annual Research Report
  • [Book] Optogenetics -Light-Sensing Proteins and Their Applications- (Chapter 5 "Molecular Mechanisms for Ion Transportation of Microbial Rhodopsins Studied by Light-induced Difference FTIR Spectroscopy")2015

    • Author(s)
      Yuji Furutani
    • Total Pages
      409
    • Publisher
      Springer
    • Related Report
      2015 Annual Research Report
  • [Remarks] 分子科学研究所生命・錯体分子科学研究領域生体分子情報研究部門 准教授 古谷祐詞

    • URL

      https://groups.ims.ac.jp/organization/furutani_g/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 分子科学研究所生命・錯体分子科学研究領域生体分子情報研究部門 准教授 古谷祐詞

    • URL

      https://groups.ims.ac.jp/organization/furutani_g/index.html

    • Related Report
      2016 Annual Research Report
  • [Remarks] 分子科学研究所生命・錯体分子科学研究領域生体分子情報研究部門 准教授 古谷祐詞

    • URL

      https://groups.ims.ac.jp/organization/furutani_g/

    • Related Report
      2015 Annual Research Report
  • [Remarks] 分子科学研究所 研究者詳細 准教授 古谷祐詞

    • URL

      https://www.ims.ac.jp/research/assoc/furutani.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 分子科学研究所 生命・錯体分子科学研究領域 生体分子情報研究部門 准教授 古谷祐詞

    • URL

      http://groups.ims.ac.jp/organization/furutani_g/

    • Related Report
      2014 Annual Research Report

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Published: 2014-04-04   Modified: 2019-03-29  

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