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Instrumentation of high-throughput Raman optical activity spectrometer and structural anaylysis of naturing amyloid fibril

Research Project

Project/Area Number 26708017
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Analytical chemistry
Research InstitutionOsaka University

Principal Investigator

Yamamoto Shigeki  大阪大学, 理学(系)研究科(研究院), 助教 (60552784)

Research Collaborator OZAKI Yukihiro  
BOUŘ Petr  
TSUKAHARA Satoshi  
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥25,610,000 (Direct Cost: ¥19,700,000、Indirect Cost: ¥5,910,000)
Fiscal Year 2016: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2015: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2014: ¥21,190,000 (Direct Cost: ¥16,300,000、Indirect Cost: ¥4,890,000)
Keywordsアミロイド / 二次構造 / 振動光学活性 / 分子断片化法 / インスリン / ラマン光学活性 / アミロイド線維 / βシート構造 / キラリティ / キラル振動分光 / 分子動力学 / 量子力学 / 分光分析 / 分析化学 / スペクトル分析
Outline of Final Research Achievements

Raman Optical Activity (ROA) is a vibrational spectroscopy sensitive to molecular conformation in solutions, which can be a new analytical method for protein structures in solution phase. However, there has been tasks to solve in ROA, a lack of standard way of interpretation of amyloid fibril proteins and a low sensitivity of the instrument. We targeted on a protein insulin as a good model of amyloid fibril-forming proteins and analyzed its second- and higher-order proteins structures of the amyloid. On the basis of comparisons of experimental and calculated ROA spectra, we could determine the stable insulin structure in the fibril as beta-roll structure, not beta-helical one. The calculation was done by combining molecular dynamics simulation and quantum mechanical simulation of the spectra aided with a fragment method. We developed a new ROA instrument with multi-lens setup which brings 10-times stronger Raman signal compared to conventional back-scattered one.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (11 results)

All 2017 2016 2015 Other

All Int'l Joint Research (2 results) Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 3 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Remarks (2 results)

  • [Int'l Joint Research] IOCB(チェコ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] IOCB(チェコ)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Low-Frequency Vibrational Modes of Poly(glycolic acid) and Thermal Expansion of Crystal Lattice Assigned On the Basis of DFT-Spectral Simulation Aided with a Fragment Method2017

    • Author(s)
      Shigeki Yamamoto, Mai Miyada, Harumi Sato, Hiromichi Hoshina, and Yukihiro Ozaki
    • Journal Title

      J. Phys. Chem. B

      Volume: 121 Issue: 5 Pages: 1128-1138

    • DOI

      10.1021/acs.jpcb.6b11304

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The C-H・・・O (Ether) Hydrogen Bonding along the (110) Direction in Polyglycolic Acid Studied by Infrared Spectroscopy, Wide-angle X-rayDiffraction, Quantum Chemical Calculations and Natural Bond Orbital Calculations2016

    • Author(s)
      Harumi Sato,Mai Miyada Shigeki Yamamoto, Kummetha Raghunatha Reddy, Yukihiro Ozaki
    • Journal Title

      Royal Society of Chemistry

      Volume: 6 Issue: 20 Pages: 16817-16823

    • DOI

      10.1039/c5ra19900j

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] New γ-Lactone Carboxylic Acids from the Lichen Parmotrema praesorediosum (Nyl.) Hale, Parmeliaceae2016

    • Author(s)
      B. L. C. Huynh, T. H. Duong, T. M. L. Do, T. G. Pinnock, L. M. Pratt, S. Yamamoto, H. Watarai, T. Tanahashi, K. P. P. Nguyen
    • Journal Title

      Rec. Nat. Prod.

      Volume: 10:3 Pages: 332-340

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] ラマン光学活性と量子力学/分子動力学計算によるインスリンアミロイド線維の高次構造解析2016

    • Author(s)
      山本 茂樹
    • Organizer
      日本分析化学会年会
    • Place of Presentation
      北海道大学
    • Year and Date
      2016-09-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] 量子力学計算によるポリグリコール酸の低波数振動の帰属2016

    • Author(s)
      山本茂樹,宮田真衣,佐藤春実,保科宏道,尾崎幸洋
    • Organizer
      日本分光学会年次講演会
    • Place of Presentation
      大阪大学
    • Year and Date
      2016-05-24
    • Related Report
      2016 Annual Research Report
  • [Presentation] Theoretical Modeling of Raman Optical Activity Signatures of Solvated α-Helices2015

    • Author(s)
      Shigeki Yamamoto, Tatsuya Furukawa, Petr Bouř, and Yukihiro Ozaki
    • Organizer
      15th International Conference on Chiroptical Spectroscopy
    • Place of Presentation
      札幌,北海道大学
    • Year and Date
      2015-08-30
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Peptide Conformations and Solvent Environments Obtained from Raman Optical Activity2015

    • Author(s)
      Shigeki Yamamoto
    • Organizer
      8th International Conference on Advanced Vibrational Spectroscopy (ICAVS8)
    • Place of Presentation
      オーストリア,ウィーン
    • Year and Date
      2015-07-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Remarks] 大阪大学大学院理学研究科化学専攻 分析化学研究室

    • URL

      http://www.chem.sci.osaka-u.ac.jp/lab/watarai/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 大阪大学大学院理学研究科化学専攻分析化学研究室ホームページ

    • URL

      http://www.chem.sci.osaka-u.ac.jp/lab/watarai/

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report

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Published: 2014-04-04   Modified: 2022-02-16  

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