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Development of the self-replicable cell-free protein synthesis system

Research Project

Project/Area Number 26710014
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field System genome science
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Shimizu Yoshihiro  国立研究開発法人理化学研究所, 生命システム研究センター, ユニットリーダー (90401231)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥23,400,000 (Direct Cost: ¥18,000,000、Indirect Cost: ¥5,400,000)
Fiscal Year 2016: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2015: ¥7,930,000 (Direct Cost: ¥6,100,000、Indirect Cost: ¥1,830,000)
Fiscal Year 2014: ¥10,660,000 (Direct Cost: ¥8,200,000、Indirect Cost: ¥2,460,000)
Keywords無細胞タンパク質合成 / リボソーム / tRNA / マイクロ流路 / 生体分子 / 蛋白質
Outline of Final Research Achievements

To achieve the reconstruction of life by a combination of biomolecules, it is considered essential to reconstitute the means for producing proteins themselves in a self-replicable state. In this research, to achieve self-replication of the translation system by itself, we regarded the PURE system, a reconstituted cell-free protein synthesis system, as a fundamental system for the reconstruction of life and developed each technological basis for ribosome reconstitution, tRNA reconstitution, and protein synthesis in a microchannel.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (21 results)

All 2017 2016 2015 2014

All Journal Article (9 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 6 results,  Acknowledgement Compliant: 3 results,  Open Access: 3 results) Presentation (12 results) (of which Int'l Joint Research: 2 results,  Invited: 5 results)

  • [Journal Article] Reaction dynamics analysis of a reconstituted Escherichia coli protein translation system by computational modeling2017

    • Author(s)
      Matsuura, T., Tanimura, N., Hosoda, K., Yomo, T., and Shimizu, Y.
    • Journal Title

      Proc Natl Acad Sci U S A

      Volume: 114 Issue: 8

    • DOI

      10.1073/pnas.1615351114

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 人工細胞と無細胞タンパク質合成システム.2017

    • Author(s)
      安達仁朗, 清水義宏
    • Journal Title

      人工細胞の創製とその応用 (シーエムシー出版 植田充美 監修)

      Volume: not applicable Pages: 8-14

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Mass spectrometry-based absolute quantification reveals rhythmic variation of mouse circadian clock proteins.2016

    • Author(s)
      Narumi R, Shimizu Y, Ukai-Tadenuma M, Ode KL, Kanda GN, Shinohara Y, Sato A, Matsumoto K, Ueda HR.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 133 Issue: 24 Pages: 3461-3467

    • DOI

      10.1073/pnas.1603799113

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short-Sleeper Gene.2016

    • Author(s)
      Sunagawa GA, Sumiyama K, Ukai-Tadenuma M, Perrin D, Fujishima H, Ukai H, Nishimura O, Shi S, Ohno R, Narumi R, Shimizu Y, Tone D, Ode KL, Kuraku S, Ueda HR.
    • Journal Title

      Cell Rep.

      Volume: 14 Issue: 3 Pages: 662-677

    • DOI

      10.1016/j.celrep.2015.12.052

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 無細胞タンパク質合成システム2015

    • Author(s)
      清水義宏、木賀大介
    • Journal Title

      生物工学会誌

      Volume: 93 Pages: 603-606

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Integration of a Reconstituted Cell-free Protein-synthesis System on a Glass Microchip2015

    • Author(s)
      Tanaka, Y. and Shimizu, Y.
    • Journal Title

      Analytical Sciences

      Volume: 31 Issue: 2 Pages: 67-71

    • DOI

      10.2116/analsci.31.67

    • NAID

      130004827457

    • ISSN
      0910-6340, 1348-2246
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Biochemical aspects of bacterial strategies for handling the incomplete translation processes.2014

    • Author(s)
      Shimizu, Y.
    • Journal Title

      Front. Microbiol.

      Volume: 5 Pages: 170-170

    • DOI

      10.3389/fmicb.2014.00170

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.2014

    • Author(s)
      Etsuo A. Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M. Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi, Takaya Abe, Hiroshi Kiyonari, Yoshihiro Shimizu, Atsushi Miyawaki, Hideo Yokota, Hiroki R. Ueda
    • Journal Title

      Cell

      Volume: 157 Issue: 3 Pages: 726-739

    • DOI

      10.1016/j.cell.2014.03.042

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 生命の部分再構成としてのPURE system2014

    • Author(s)
      清水義宏
    • Journal Title

      生体の科学

      Volume: 65 Pages: 498-499

    • Related Report
      2014 Annual Research Report
  • [Presentation] 新規タンパク質定量法「MS-QBiC」による 体内時刻の測定2017

    • Author(s)
      清水義宏
    • Organizer
      神戸ポートアイランド創薬フォーラム
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 新規タンパク質定量法「MS-QBiC」による 体内時刻の測定2017

    • Author(s)
      清水義宏
    • Organizer
      メディカルジャパン2017大阪
    • Place of Presentation
      インテックス大阪
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 次世代シーケンサーを用いたmRNA 配列とリボソームの相互作用解析2016

    • Author(s)
      清水義宏
    • Organizer
      「細胞を創る」研究会9.0
    • Place of Presentation
      早稲田大学
    • Year and Date
      2016-11-21
    • Related Report
      2016 Annual Research Report
  • [Presentation] 次世代シーケンサーを用いたmRNA 配列とリボソームの相互作用解析2016

    • Author(s)
      清水義宏
    • Organizer
      第11回無細胞生命科学研究会
    • Place of Presentation
      岩手雫石 ゆこたんの森
    • Year and Date
      2016-10-06
    • Related Report
      2016 Annual Research Report
  • [Presentation] Body time detection by a novel protein quantification method using mass spectrometry and cell-free protein synthesis system.2016

    • Author(s)
      Shimizu Y, Narumi R, Ueda HR
    • Organizer
      QBiC Symposium 2016
    • Place of Presentation
      千里ライフサイエンスセンター
    • Year and Date
      2016-09-05
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] タンパク質合成の再構成2016

    • Author(s)
      清水義宏
    • Organizer
      日本進化学会第18回大会ワークショップ
    • Place of Presentation
      東京工業大学
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 再構成型無細胞タンパク質合成システムを利用した新規タンパク質定量法「MS-QBiC」による体内時刻の測定2016

    • Author(s)
      清水義宏, 鳴海良平, 上田泰己
    • Organizer
      第68回日本生物工学会大会
    • Place of Presentation
      富山国際会議場
    • Related Report
      2016 Annual Research Report
  • [Presentation] 次世代シーケンサーを用いたmRNA配列とリボソームの相互作用解析2015

    • Author(s)
      清水義宏
    • Organizer
      第10回無細胞生命科学研究会
    • Place of Presentation
      理化学研究所横浜キャンパス
    • Year and Date
      2015-10-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] 全成分タンパク質合成反応モデルの構築とこれを用いた反応ダイナミクス解析2015

    • Author(s)
      松浦友亮、清水義宏、細田一史、谷村直樹、四方哲也
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] Systems biological approaches for the E. coli translation system2015

    • Author(s)
      Yoshihiro Shimizu
    • Organizer
      Workshop in 13th European Conference on Artificial Life
    • Place of Presentation
      York Univ, UK
    • Year and Date
      2015-07-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] PURE systemによるペプチド合成を利用したマウス時計タンパク質の絶対定量2014

    • Author(s)
      鳴海良平, 清水義宏, 上田泰己
    • Organizer
      第9回無細胞生命科学研究会
    • Place of Presentation
      大阪大学
    • Year and Date
      2014-10-09
    • Related Report
      2014 Annual Research Report
  • [Presentation] Reconstitution of a translation system from molecular parts.2014

    • Author(s)
      Yoshihiro Shimizu
    • Organizer
      Development and future of artificial cells: Computation, fluctuation, and evolution.
    • Place of Presentation
      京都大学
    • Year and Date
      2014-06-10
    • Related Report
      2014 Annual Research Report
    • Invited

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Published: 2014-04-04   Modified: 2018-03-22  

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