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Investigation for the mechanism of the gastric proton pump that generates the steepest cation gradient

Research Project

Project/Area Number 26711005
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Functional biochemistry
Research InstitutionNagoya University

Principal Investigator

Abe Kazuhiro  名古屋大学, 細胞生理学研究センター, 准教授 (60596188)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥14,950,000 (Direct Cost: ¥11,500,000、Indirect Cost: ¥3,450,000)
Fiscal Year 2016: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2015: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
KeywordsP型ATPase / 膜タンパク質 / 電子顕微鏡 / 膜輸送体 / 胃プロトンポンプ / P-type ATPase / 能動輸送体 / H,K-ATPase / 電子線結晶学 / 生化学 / 極低温電子顕微鏡
Outline of Final Research Achievements

Gastric proton pump is a membrane protein responsible for the gastric acid secretion, therefore it is a molecular target for the anti-ulcer drug. In this research, we attempt to determine its structure by both electron and X-ray crystallography, and establish a large-scale expression system using mammalian cells for the functional analysis and X-ray crystallography.
We proposed the binding model of acid suppressants to the gastric proton pump, by using electron crystallographic structure analyzed at 6.5 A resolution, which is conformed by the mutagenesis and derivatives of acid suppressants.
Furthermore, we successfully established the mammalian cell expression system, which allow us to generate 3D crystals for X-ray. Determined structure reveals the mechanism of proton extrusion to the highly acidic solution of the stomach.

Report

(4 results)
  • 2017 Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (14 results)

All 2016 2015 2014

All Journal Article (4 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 2 results,  Acknowledgement Compliant: 4 results) Presentation (10 results) (of which Int'l Joint Research: 2 results,  Invited: 9 results)

  • [Journal Article] Cryo-electron microscopy for structure analyses of membrane proteins in the lipid bilayer2016

    • Author(s)
      Abe K. & Fujiyoshi Y.
    • Journal Title

      Current Opinion in Structural Biology

      Volume: 39 Pages: 71-79

    • DOI

      10.1016/j.sbi.2016.06.001

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Isoration of H+,K+-ATPase-enriched membrane fraction from pig stomach2016

    • Author(s)
      Abe K ., Olesen C.
    • Journal Title

      Methods in Mol. Biol.

      Volume: 1377 Pages: 19-28

    • DOI

      10.1007/978-1-4939-3179-8_4

    • ISBN
      9781493931781, 9781493931798
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Two-dimensional crystallization of gastric H+,K+-ATPase for structural analysis by electron crystallography2016

    • Author(s)
      Abe K.
    • Journal Title

      Methods in Mol. Biol.

      Volume: 1377 Pages: 433-458

    • DOI

      10.1007/978-1-4939-3179-8_39

    • ISBN
      9781493931781, 9781493931798
    • Related Report
      2015 Annual Research Report
    • Acknowledgement Compliant
  • [Journal Article] Systematic comparison of molecular conformations of H+,K+-ATPase reveals an important contribution of the A-M2 linker for the luminal gating.2014

    • Author(s)
      K. Abe, K. Tani and Y. Fujiyoshi
    • Journal Title

      Journal of Biological Chemistry

      Volume: 289 Issue: 44 Pages: 30590-30601

    • DOI

      10.1074/jbc.m114.584623

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Electron crystallographic analysis of gastric proton pump2016

    • Author(s)
      Abe K.
    • Organizer
      IPR Seminar "Introduction and overview of cryo-electron microscopy"
    • Place of Presentation
      Osaka
    • Year and Date
      2016-02-19
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 胃プロトンポンプの構造生理学2016

    • Author(s)
      阿部一啓
    • Organizer
      千里ライフサイエンスセミナーK2 トランスポーターと創薬~構造と病態からのアプローチ~
    • Place of Presentation
      千里ライフサイエンスセンター 大阪
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 胃H+,K+-ATPaseの 胃酸抑制剤結合状態についての考察2015

    • Author(s)
      阿部一啓
    • Organizer
      日本生体エネルギー研究会 第41回 討論会
    • Place of Presentation
      東京
    • Year and Date
      2015-12-22
    • Related Report
      2015 Annual Research Report
  • [Presentation] Antagonist-bound structure of gastric proton pump2015

    • Author(s)
      Abe K.
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Structural physiology of gastric proton pump2015

    • Author(s)
      Abe K.
    • Organizer
      Denmark-Japan Joint Workshop on Ion Transport Proteins
    • Place of Presentation
      Yokohama
    • Year and Date
      2015-09-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Systematic comparison of the molecular conformation of gastric H+,K+-ATPase in E2P state analogs2014

    • Author(s)
      阿部一啓
    • Organizer
      日本生体エネルギー研究会 第40回討論会
    • Place of Presentation
      愛媛大学
    • Year and Date
      2014-12-11 – 2014-12-13
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 胃プロトンポンプ H+,K+-ATPaseの構造生理学2014

    • Author(s)
      阿部一啓
    • Organizer
      九州地区 生理薬理系研究会
    • Place of Presentation
      福岡医科大学
    • Year and Date
      2014-12-09
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Electron crystallographic analysis of gastric proton pump.2014

    • Author(s)
      Abe K.
    • Organizer
      JEM Next-Generation Microscopic Science, Opening Symposium “Toward Cross-disciplinary researches between Life and Material Sciences”
    • Place of Presentation
      Awaji
    • Year and Date
      2014-11-03 – 2014-11-04
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Structural and biochemical analysis of gastric H+,K+-ATPase in E2P-analogue conformations.2014

    • Author(s)
      Abe K.
    • Organizer
      14th International Conference Na,K-ATPase and related ATPases: Structure, mechanism, cell biology, health and diseas
    • Place of Presentation
      Lunteren, Netherlands
    • Year and Date
      2014-08-30 – 2014-09-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 胃プロトンポンプの構造生理学2014

    • Author(s)
      阿部一啓
    • Organizer
      第9回トランスポーター研究会
    • Place of Presentation
      名古屋市立大学
    • Year and Date
      2014-06-14 – 2014-06-15
    • Related Report
      2014 Annual Research Report
    • Invited

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Published: 2014-04-04   Modified: 2019-12-27  

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