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Restructuring community theory: below-ground ecosystems as "black boxes" in ecology

Research Project

Project/Area Number 26711026
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Ecology/Environment
Research InstitutionKyoto University

Principal Investigator

Toju Hirokazu  京都大学, 生態学研究センター, 准教授 (60585024)

Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥24,050,000 (Direct Cost: ¥18,500,000、Indirect Cost: ¥5,550,000)
Fiscal Year 2017: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2016: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2015: ¥11,830,000 (Direct Cost: ¥9,100,000、Indirect Cost: ¥2,730,000)
Fiscal Year 2014: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Keywords生態系 / 生物間相互作用 / ネットワーク / 共生 / 群集 / 土壌 / 真菌 / 種間相互作用 / 生物多様性 / 内生菌 / シーケンシング / 菌根 / 地下 / 生態学 / 進化 / 微生物 / 次世代シーケンシング / 生物群集
Outline of Final Research Achievements

Plant and fungal communities are tightly linked with each other, forming complex webs of symbioses belowground. As feedbacks between plant and fungal community dynamics determine the productivity and stability of both natural and agricultural ecosystems, integrating the knowledge of ecological and evolutionary processes governing below-ground plant-fungus interactions is of particular importance. In a series of studies uncovering hyper-species-rich plant-fungus networks, we have found that not only mycorrhizal fungi but also various taxonomic groups of pathogenic and endophytic fungi form complex webs of interactions with diverse host plants. Such network data can be used for detecting statistical signs of symbiont-symbiont interactions within plant root systems, highlighting network-hub fungi that potentially organize whole microbiome processes.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (58 results)

All 2018 2017 2016 2015 2014 Other

All Int'l Joint Research (8 results) Journal Article (15 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 15 results,  Acknowledgement Compliant: 9 results,  Open Access: 7 results) Presentation (32 results) (of which Int'l Joint Research: 7 results,  Invited: 25 results) Book (1 results) Remarks (2 results)

  • [Int'l Joint Research] スタンフォード大学/生物学部(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] ベルン大学/植物科学研究所(スイス)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] 中国科学院/遺伝・発生生物学研究所(中国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] アムステルダム自由大学/生態科学研究学部(オランダ)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] スタンフォード大学/カリフォルニア大学サンタクルーズ校(米国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] オーフス大学(デンマーク)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] サンパウロ大学(ブラジル)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Stanford University(米国)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Priority effects can persist across floral generations in nectar microbial metacommunities.2018

    • Author(s)
      Toju H, Vannette RL, Gauthier MPL, Dhami MK, Fukami T
    • Journal Title

      Oikos

      Volume: 127 Issue: 3 Pages: 345-352

    • DOI

      10.1111/oik.04243

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Root-associated fungi shared between arbuscular mycorrhizal and ectomycorrhizal conifers in a temperate forest2018

    • Author(s)
      Toju, H. and Sato, H.
    • Journal Title

      Frontiers in Microbiology

      Volume: 9 Pages: 433-433

    • DOI

      10.3389/fmicb.2018.00433

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Core microbiomes for sustainable agroecosystems2018

    • Author(s)
      Hirokazu Toju, Kabir G. Peay, Masato Yamamichi, Kazuhiko Narisawa, Kei Hiruma, Ken Naito, Shinji Fukuda, Masayuki Ushio, Shinji Nakaoka, Yusuke Onoda, Kentaro Yoshida, Klaus Schlaeppi, Yang Bai, Ryo Sugiura, Yasunori Ichihashi, Kiwamu Minamisawa, E. Toby Kiers
    • Journal Title

      Nature Plants

      Volume: 4 Issue: 5 Pages: 247-257

    • DOI

      10.1038/s41477-018-0139-4

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Species-rich networks and eco-evolutionary synthesis at the metacommunity level.2017

    • Author(s)
      Toju H, Yamamichi M, Guimaraes P R Jr, Olesen J M, Mougi A, Yoshida T and Thompson J N
    • Journal Title

      Nature Ecology and Evolution

      Volume: 1 Issue: 2 Pages: 0024-0024

    • DOI

      10.1038/s41559-016-0024

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Host shifts enhance diversification of ectomycorrhizal fungi: diversification rate analysis of the ectomycorrhizal fungal genera Strobilomyces and Afroboletus with a 80-gene phylogeny2017

    • Author(s)
      Sato H, Tanabe AS, Toju H
    • Journal Title

      New Phytologist

      Volume: 214 Issue: 1 Pages: 443-454

    • DOI

      10.1111/nph.14368

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Ericaceous plant-fungus network in a harsh alpine-subalpine environment2016

    • Author(s)
      Toju H, Tanabe AS, Ishii HS
    • Journal Title

      Molecular Ecology

      Volume: 25 Issue: 13 Pages: 3242-3257

    • DOI

      10.1111/mec.13680

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Networks depicting the fine-scale co-occurrences of fungi in soil horizons2016

    • Author(s)
      Toju H, Kishida O, Katayama N, Takagi K
    • Journal Title

      PLOS ONE

      Volume: 11 Issue: 11 Pages: e0165987-e0165987

    • DOI

      10.1371/journal.pone.0165987

    • NAID

      120005895363

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Structure of phyllosphere fungal communities in a tropical dipterocarp plantation: a massively parallel next-generation sequencing analysis2016

    • Author(s)
      Izuno A, Tanabe AS, Toju H, Yamasaki M, Indrioko S, Isagi Y
    • Journal Title

      Mycoscience

      Volume: 57 Issue: 3 Pages: 171-180

    • DOI

      10.1016/j.myc.2015.12.005

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Network modules and hubs in the symbiont fungal biome of plant roots.2016

    • Author(s)
      Toju H, Yamamoto S, Tanabe AS, Hayakawa T, Ishii HS
    • Journal Title

      Journal of the Royal Society Interface

      Volume: in press Issue: 116 Pages: 20151097-20151097

    • DOI

      10.1098/rsif.2015.1097

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Contrasting diversity and host association of ectomycorrhizal basidiomycetes versus root-associated ascomycetes in a dipterocarp rainforest2015

    • Author(s)
      Sato H, Tanabe AS, Toju H
    • Journal Title

      PLOS ONE

      Volume: 10 Issue: 4 Pages: e0125550-e0125550

    • DOI

      10.1371/journal.pone.0125550

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Below-ground plant–fungus network topology is not congruent with above-ground plant–animal network topology2015

    • Author(s)
      Toju H, Guimarães PR Jr, Olesen JM, and Thompson JN
    • Journal Title

      Science Advances

      Volume: 1 Issue: 9

    • DOI

      10.1126/sciadv.1500291

    • NAID

      120005666205

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] High-throughput DNA barcoding for ecological network studies2015

    • Author(s)
      Toju H
    • Journal Title

      Population Ecology

      Volume: 57 Issue: 1 Pages: 37-51

    • DOI

      10.1007/s10144-014-0472-z

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Assembly of complex plant-fungus networks.2014

    • Author(s)
      Toju H, Guimaraes PR Jr, Olesen JM, and Thompson JN
    • Journal Title

      Nature Communications

      Volume: 5 Issue: 1 Pages: 5273-5273

    • DOI

      10.1038/ncomms6273

    • NAID

      120005477689

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Diet disparity among sympatric herbivorous cichlids in the same ecomorphs in Lake Tanganyika: amplicon pyrosequences on algal farms and stomach contents2014

    • Author(s)
      Hata, H, Tanabe, AS, Yamamoto, S, Toju, H, Kohda, M, Hori, M
    • Journal Title

      BMC Biology

      Volume: 12 Issue: 1 Pages: 90-90

    • DOI

      10.1186/s12915-014-0090-4

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Spatial segregation and aggregation of ectomycorrhizal and root-endophytic fungi in the seedlings of two Quercus species.2014

    • Author(s)
      Yamamoto S, Sato H, Tanabe AS, Hidaka A, Kadowaki K, H Toju
    • Journal Title

      PLoS ONE

      Volume: 9(5) Issue: 5 Pages: e96363-e96363

    • DOI

      10.1371/journal.pone.0096363

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Exploring "hidden" ecosystem functions of plant-microbiome linkages" linkages2018

    • Author(s)
      Toju H
    • Organizer
      Symposium: Advances in Ecology with Functional Traits
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 「コア共生微生物」で強い植物をつくる: みえてきた微生物共生ネットワーク2017

    • Author(s)
      東樹宏和
    • Organizer
      日本育種学会若手の会
    • Place of Presentation
      名古屋
    • Year and Date
      2017-03-30
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 次世代シーケンシングで食物網を探る: クモ・寄生蜂・土壌動物・植食性昆虫2017

    • Author(s)
      東樹宏和・馬場友希
    • Organizer
      日本応用動物昆虫学会
    • Place of Presentation
      東京
    • Year and Date
      2017-03-29
    • Related Report
      2016 Annual Research Report
  • [Presentation] 私たちは生態系を設計できるのか? 情報革新で究極の相互作用網を編む2017

    • Author(s)
      東樹宏和
    • Organizer
      日本生態学会シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] 自然生態系に潜む超多様な真菌たちは農業の救世主となるのか?2017

    • Author(s)
      東樹宏和
    • Organizer
      茨城大学重点研究ジョイントシンポジウム
    • Place of Presentation
      茨城
    • Year and Date
      2017-03-09
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Detecting core microbiomes for designing natural and agricultural ecosystems2017

    • Author(s)
      Toju H
    • Organizer
      RIKEN Shirasu Lab Seminar
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ネットワークで生物種間の関係を探る2017

    • Author(s)
      東樹宏和
    • Organizer
      ネットワーク科学セミナー2017
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] コア共生微生物の探索技術を基に農業生態系のデザインを考える2017

    • Author(s)
      東樹宏和
    • Organizer
      植物微生物研究会 第27回研究交流会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 微生物どうしの関係性をネットワークでとらえる2017

    • Author(s)
      東樹宏和
    • Organizer
      住友化学セミナー
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 微生物群集内における内生菌の機能解明に向けて2017

    • Author(s)
      東樹宏和
    • Organizer
      茨城大学重点研究ジョイントシンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 植物体内の多様な植物共生菌2017

    • Author(s)
      東樹宏和
    • Organizer
      近畿作物・育種研究会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] コア共生微生物で農業生態系を設計する2017

    • Author(s)
      東樹宏和
    • Organizer
      植物科学シンポジウム2017
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 微生物間の相互作用ネットワークを俯瞰する2017

    • Author(s)
      東樹宏和
    • Organizer
      えこえぴWS2017
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 白眉と地球生態系2017

    • Author(s)
      東樹宏和
    • Organizer
      白眉の日講演
    • Related Report
      2017 Annual Research Report
  • [Presentation] 菌根菌・内生菌・寄生菌で構成される植物共生微生物系を読み解く -ネットワーク科学の視点から-2017

    • Author(s)
      東樹宏和
    • Organizer
      環境微生物系学会合同大会2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] 最強の植物内生菌がわかったかもしれない2017

    • Author(s)
      東樹宏和
    • Organizer
      第3回農学中手の会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 植物と共生微生物の超複雑ネットワークを読み解く2016

    • Author(s)
      東樹宏和
    • Organizer
      IGERセミナー
    • Place of Presentation
      名古屋
    • Year and Date
      2016-12-19
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 植物を取り巻く微生物叢から中核菌候補を抽出する2016

    • Author(s)
      東樹宏和
    • Organizer
      科学技術未来戦略ワークショップ
    • Place of Presentation
      東京
    • Year and Date
      2016-12-04
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 菌類・微生物の「超」多様性をひも解き、地球の未来を考える2016

    • Author(s)
      東樹宏和
    • Organizer
      第32回国際生物学賞記念シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2016-11-23
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 強い農業生態系」の設計に向けて: 共生微生物・捕食者群集・土壌生物圏2016

    • Author(s)
      東樹宏和
    • Organizer
      第2回農学中手の会
    • Place of Presentation
      滋賀
    • Year and Date
      2016-11-10
    • Related Report
      2016 Annual Research Report
  • [Presentation] 群集生態学であぶり出す共生微生物間の大規模ネットワーク2016

    • Author(s)
      東樹宏和
    • Organizer
      微生物生態学会シンポジウム
    • Place of Presentation
      横須賀
    • Year and Date
      2016-10-24
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] DNA情報とネットワーク理論で微生物生態系を読み解く2016

    • Author(s)
      東樹宏和
    • Organizer
      日本農芸化学会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2016-03-30
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] MiSeqを用いた超多検体分析 –サンプリングからシーケンスまで–2016

    • Author(s)
      東樹宏和
    • Organizer
      日本生態学会
    • Place of Presentation
      仙台国際センター
    • Year and Date
      2016-03-24
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] High-throughput DNA sequencing and network science for designing eco-evolutionary feedback research2016

    • Author(s)
      Hirokazu Toju
    • Organizer
      日本生態学会
    • Place of Presentation
      仙台国際センター
    • Year and Date
      2016-03-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] High-throughput DNA sequencing for understanding hyper-species-rich ecological and coevolutionary networks2016

    • Author(s)
      Hirokazu Toju
    • Organizer
      EE Biology Department Seminar, UCSC
    • Place of Presentation
      University of California, Santa Cruz
    • Year and Date
      2016-01-20
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Coevolutionary Networks.in Metacommunities2016

    • Author(s)
      Hirokazu Toju
    • Organizer
      The Society of American Naturalist Meeting
    • Place of Presentation
      Asilomar, California
    • Year and Date
      2016-01-11
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] How can we use high-throughput DNA sequencing towards the understanding of natural community dynamics?"2015

    • Author(s)
      Hirokazu Toju
    • Organizer
      Eco-Evo Lunch, Stanford Biology
    • Place of Presentation
      Stanford University
    • Year and Date
      2015-10-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Uncovering the most complex biosphere: coexistence of microbes in the soil2015

    • Author(s)
      Hirokazu Toju
    • Organizer
      日本数理生物学会
    • Place of Presentation
      同志社大学
    • Year and Date
      2015-08-26
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] フロンティアを失った世代の逆襲: 微生物の超多様性に生命進化の本質を見いだす2015

    • Author(s)
      東樹宏和
    • Organizer
      日本進化学会
    • Place of Presentation
      中央大学
    • Year and Date
      2015-08-22
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 魑魅魍魎はびこる土壌微生物圏に秩序は見いだせるのか? 環境DNAデータをネットワーク理論で料理する2015

    • Author(s)
      東樹宏和
    • Organizer
      日本進化学会
    • Place of Presentation
      中央大学
    • Year and Date
      2015-08-20
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 大規模DNAバーコーディング情報をもとに地下生態系の超複雑ネットワークを紐解く2015

    • Author(s)
      東樹宏和
    • Organizer
      複雑ネットワークグループセミナー
    • Place of Presentation
      国立情報学研究所
    • Year and Date
      2015-07-23
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 土壌真菌群集と植物のネットワーク解析: 土壌管理への展望」2014

    • Author(s)
      東樹宏和
    • Organizer
      土壌微生物学会60周年記念シンポジウム
    • Place of Presentation
      アクトシティ浜松
    • Year and Date
      2014-10-24
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Book] DNA情報で生態系を読み解く―環境DNA・大規模群集調査・生態ネットワーク―2016

    • Author(s)
      東樹宏和
    • Total Pages
      224
    • Publisher
      共立出版
    • Related Report
      2015 Annual Research Report
  • [Remarks] 植物を支える「共生ネットワーク」は地上と地下で構造が違う -見えてきた地下生物圏の構造-

    • URL

      http://www.kyoto-u.ac.jp/ja/research/research_results/2015/151024_1.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 植物体内の共生菌社会を動かす中心核 -農業における微生物利用の新たな戦略-

    • URL

      http://www.kyoto-u.ac.jp/ja/research/research_results/2015/160309_1.html

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2022-02-28  

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