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Reconstruction of an evolution process with allopolyploidization based on whole genome seqeunce information

Research Project

Project/Area Number 26712003
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Crop production science
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Mochida Keiichi  国立研究開発法人理化学研究所, 環境資源科学研究センター, チームリーダー (90387960)

Research Collaborator Sakurai Tetsuya  国立研究開発法人理化学研究所, 環境資源科学研究センター, ユニットリーダー (90415167)
Yamaguchi Yukiko (Uehara Yukiko)  国立研究開発法人理化学研究所, 環境資源科学研究センター, テクニカルスタッフ
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥22,490,000 (Direct Cost: ¥17,300,000、Indirect Cost: ¥5,190,000)
Fiscal Year 2016: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2015: ¥8,320,000 (Direct Cost: ¥6,400,000、Indirect Cost: ¥1,920,000)
Fiscal Year 2014: ¥8,970,000 (Direct Cost: ¥6,900,000、Indirect Cost: ¥2,070,000)
Keywordsコムギ / 異質倍数性 / トランスクリプトーム / 同祖遺伝子 / 倍数性進化 / 農林水産物 / ゲノム
Outline of Final Research Achievements

To investigate differentiations of gene expression of homoeologs located on A, B and D- genome in common wheat, we constructed and analyzed a co-expression gene network of wheat homoeologs based on more than 700 RNA-seq data publicly available in wheat. Moreover, we performed transcriptome analysis of various wheat related species including A-genome ancestors, tetraploid wheat and hexaploid wheat to investigate functional differentiation of homoeologs through alloployploidization. Then, we revealed a putative relation between transcriptional changes in response to temperature environments and genome polyploidization of wheat.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (5 results)

All 2017 2016 2015

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 2 results,  Acknowledgement Compliant: 2 results) Presentation (2 results) (of which Int'l Joint Research: 1 results,  Invited: 2 results)

  • [Journal Article] Exploring Genetic Diversity in Plants Using High-Throughput Sequencing Techniques2016

    • Author(s)
      Onda Y, Mochida K
    • Journal Title

      Current Genomics

      Volume: 17 Issue: 4 Pages: 356365-356365

    • DOI

      10.2174/1389202917666160331202742

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Determination of growth stages and metabolic profiles in Brachypodium distachyon for comparison of developmental context with Triticeae crops.2015

    • Author(s)
      Onda, Y., Hashimoto, K., Yoshida, T., Sakurai, T., Sawada, Y., Hirai, M.Y., Toyooka, K., Mochida, K. and Shinozaki, K.
    • Journal Title

      Proceedings of the Royal Society B

      Volume: 282 Issue: 1811 Pages: 1-8

    • DOI

      10.1098/rspb.2015.0964

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crop improvement using life cycle datasets acquired under field conditions2015

    • Author(s)
      Mochida K, Saisho D, Hirayama T.
    • Journal Title

      Front. Plant Sci.

      Volume: 6 Pages: 740-740

    • DOI

      10.3389/fpls.2015.00740

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Crop design based on life cycle datasets toward sustainable agriculture2017

    • Author(s)
      Keiichi Mochida
    • Organizer
      第9回植物ストレス科学研究シンポジウム
    • Place of Presentation
      岡山県倉敷市
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 異質倍数体植物の環境適応性に関わるゲノム機能の研究2016

    • Author(s)
      高萩航太郎、井上小槙、中山梨沙、清水みなみ、山口(上原)由紀子、恩田義彦、篠崎一雄、持田恵一
    • Organizer
      第11回ムギ類研究会
    • Place of Presentation
      岡山県倉敷市
    • Related Report
      2016 Annual Research Report
    • Invited

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Published: 2014-04-04   Modified: 2018-03-22  

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