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Genome-wide modeling of fruit development and maturation in persimmons

Research Project

Project/Area Number 26712005
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Horticultural science
Research InstitutionKyoto University

Principal Investigator

Akagi Takashi  京都大学, 農学研究科, 助教 (50611919)

Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥22,620,000 (Direct Cost: ¥17,400,000、Indirect Cost: ¥5,220,000)
Fiscal Year 2017: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2016: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2015: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2014: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Keywordsカキ / 果実 / 形状多様性 / 進化 / 全ゲノム解読 / 倍数性 / バイオインフォマティクス / 共発現ネットワーク / ゲノム解読 / 多様性 / 形状 / トランスクリプトーム / 果樹 / ゲノムワイド解析 / 果実形質 / 成熟多様性 / 全ゲノム情報 / ゲノム進化
Outline of Final Research Achievements

We attempted to quantitatively characterize the pattern of fruit shape development and to identify genetic factors contributing to that pattern, in a wide variety of persimmon cultivars.
We developed a method to quantify the pattern of fruit development by separating the principal components of complex shape of persimmon fruits, with "SHAPE" software. In the stage of fruit shape development, transcriptomic data in persimmon cultivars/segregated populations were assessed with Pearson correlation or co-expression network analyses, to identify the genetic factors associated with fruit shapes. Lastly, we found some candidate genes and potential molecular pathways which contribut to fruit shape determining in a wide variety of persimmon accessions.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (7 results)

All 2018 2017 2016 Other

All Int'l Joint Research (1 results) Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 3 results,  Open Access: 3 results,  Acknowledgement Compliant: 2 results) Presentation (3 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results)

  • [Int'l Joint Research] University of California Davis(米国)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Quantitative characterization of fruit shape and its differentiation pattern in diverse persimmon ( Diospyros kaki ) cultivars2018

    • Author(s)
      Maeda Haruka、Akagi Takashi、Tao Ryutaro
    • Journal Title

      Scientia Horticulturae

      Volume: 228 Pages: 41-48

    • DOI

      10.1016/j.scienta.2017.10.006

    • NAID

      120006457164

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic Regulation of the Sex Determination Gene MeGI in Polyploid Persimmon2016

    • Author(s)
      Akagi T, Henry IM, Kawai T, Comai L, Tao R
    • Journal Title

      The Plant Cell

      Volume: 28 Issue: 12 Pages: 2905-2915

    • DOI

      10.1105/tpc.16.00532

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A male determinant gene in diploid dioecious Diospyros, OGI, is required for male flower production in monoecious individuals of oriental persimmon (D. kaki)2016

    • Author(s)
      Akagi T, Kawai T, Tao R
    • Journal Title

      Scientia Horticulturae

      Volume: 213 Pages: 243-251

    • DOI

      10.1016/j.scienta.2016.10.046

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Molecular pathways controlling the “shape” of persimmon fruits2018

    • Author(s)
      Maeda Haruka, Akagi Takashi, Tao Ryutaro
    • Organizer
      Plant and Animal Genome Congress XXVI
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] カキにみられる多様な果実形状の数値化2017

    • Author(s)
      前田春香*・赤木剛士・田尾 龍太郎
    • Organizer
      園芸学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Whole genome sequencing project in persimmons2016

    • Author(s)
      Akagi T, Comai L, Tao R, Henry IM
    • Organizer
      The ISHS VI International Symposium on Persimmon
    • Place of Presentation
      Spain, Valencia
    • Year and Date
      2016-10-16
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited

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Published: 2014-04-04   Modified: 2022-02-16  

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