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Linking microbial community with nitrogen cycling in forests

Research Project

Project/Area Number 26712015
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Forest science
Research InstitutionThe University of Tokyo

Principal Investigator

Isobe Kazuo  東京大学, 農学生命科学研究科, 助教 (30621833)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥24,700,000 (Direct Cost: ¥19,000,000、Indirect Cost: ¥5,700,000)
Fiscal Year 2016: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2015: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2014: ¥15,080,000 (Direct Cost: ¥11,600,000、Indirect Cost: ¥3,480,000)
Keywords森林土壌 / 窒素循環 / 土壌微生物 / アンモニア生成 / 硝化 / 脱窒 / 森林 / 微生物群集
Outline of Final Research Achievements

The nitrogen supply is one of the largest factors for the plant growth and production in many forests. In this project, we attempted to understand the relationship between environmental properties, microbial community dynamics, and nitrogen cycling rate, with the focus on the fact that nitrogen cycling is largely mediated by soil microbes. Then, we found the hierarchical structure between them in which the production rate of ammonium and nitrate, available nitrogen species to plants, are largely regulated by the ammonium and nitrate producing microbial abundances as well as the substrate supply, and the abundances were largely affected by the environmental properties. The findings here can not only enhance our understanding of nitrogen cycling in forests but provide the scientific basis to predict the response of the nitrogen cycling to the environmental change.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (20 results)

All 2017 2016 2015 2014 Other

All Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 3 results,  Acknowledgement Compliant: 3 results,  Open Access: 2 results) Presentation (16 results) (of which Int'l Joint Research: 3 results,  Invited: 5 results) Remarks (1 results)

  • [Journal Article] Higher diversity and abundance of denitrifying microorganisms in environments than considered previously2015

    • Author(s)
      Wei Wei, Kazuo Isobe, Tomoyasu Nishizawa, Lin Zhu, Yutaka Shiratori, Nobuhito Ohte, Keisuke Koba, Shigeto Otsuka, Keishi Senoo
    • Journal Title

      The ISME Journal

      Volume: 9 Pages: 1954-1965

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Microbial regulation of nitrogen dynamics along the hillslope of a natural forest2015

    • Author(s)
      Isobe, K., N. Ohte, T. Oda, S. Murabayashi, W. Wei, K. Senoo, N. Tokuchi, and R. Tateno
    • Journal Title

      Frontiers in Environmental Science

      Volume: 2 Pages: 1-8

    • DOI

      10.3389/fenvs.2014.00063

    • NAID

      120005946998

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Development of PCR primers targeting fungal nirK to study fungal denitrification in the environment2015

    • Author(s)
      Wei Wei, Kazuo Isobe, Yutaka Shiratori, Tomoyasu Nishizawa, Nobuhito Ohte, Yuta Ise, Shigeto Otsuka, Keishi Senoo
    • Journal Title

      Soil Biology and Biochemistry

      Volume: 81 Pages: 282-286

    • DOI

      10.1016/j.soilbio.2014.11.026

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Spatio-temporal dynamics of N-cycling microbial community in forest soils.2017

    • Author(s)
      Kazuo Isobe
    • Organizer
      BIOGEOMON 2017 9th International Symposium
    • Place of Presentation
      Litomysl conference center(チェコ)
    • Year and Date
      2017-08-20
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 北方林における積雪パターンの変化に対する微生物群集の応答2016

    • Author(s)
      岡 裕章・磯部 一夫・渡辺 恒大・舘野 隆之輔・妹尾 啓史・柴田 英昭
    • Organizer
      日本微生物生態学会第31回大会
    • Place of Presentation
      横須賀市文化会館(神奈川県横須賀市)
    • Year and Date
      2016-10-23
    • Related Report
      2016 Annual Research Report
  • [Presentation] Ecological studies of nitrifying microbial communities in forest soil2016

    • Author(s)
      Kazuo Isobe
    • Organizer
      BNI International Symposium
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-09-04
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 森林土壌における微生物の増殖・死滅と窒素動態2016

    • Author(s)
      磯部一夫、岡裕章、渡辺恒大、浦川梨恵子、舘野隆之輔、妹尾啓史、柴田英昭
    • Organizer
      第127回日本森林学会大会
    • Place of Presentation
      日本大(神奈川県藤沢市)
    • Year and Date
      2016-03-28
    • Related Report
      2015 Annual Research Report
  • [Presentation] 森林生態系における微生物群集と窒素循環過程の時空間的変動2016

    • Author(s)
      磯部一夫
    • Organizer
      日本生態学会大会第63回仙台大会
    • Place of Presentation
      仙台国際センター(宮城県仙台市)
    • Year and Date
      2016-03-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] Higher diversity and abundance of denitrifying microorganisms in environments than considered previously.2015

    • Author(s)
      Kazuo Isobe
    • Organizer
      Frontiers in Soil Microbiology 2015
    • Place of Presentation
      Xi-Jiao Hotel(Beijing, China)
    • Year and Date
      2015-10-26
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 日本各地の森林における土壌微生物群集組成と窒素循環プロセスに対する寄与2015

    • Author(s)
      伊勢裕太、磯部一夫、浦川梨恵子、妹尾啓史、大塚重人、大手信人
    • Organizer
      日本微生物生態学会第30回大会
    • Place of Presentation
      土浦亀城プラザ(茨城県土浦市)
    • Year and Date
      2015-10-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] 森林の土壌微生物群集の1年2015

    • Author(s)
      岡裕章、磯部一夫、渡辺恒大、舘野隆之輔、浦川梨恵子、妹尾啓史、大塚重人、柴田英昭
    • Organizer
      日本微生物生態学会第30回大会
    • Place of Presentation
      土浦亀城プラザ(茨城県土浦市)
    • Year and Date
      2015-10-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] 陸域環境における亜硝酸還元酵素遺伝子の分布と組成2015

    • Author(s)
      畔上洋一、磯部一夫、魏魏、角田洋子、白鳥豊、西澤智康、木庭啓介、大手信人、大塚重人、妹尾啓史
    • Organizer
      日本微生物生態学会第30回大会
    • Place of Presentation
      土浦亀城プラザ(茨城県土浦市)
    • Year and Date
      2015-10-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] 窒素循環研究に対する微生物生態学的アプローチ2015

    • Author(s)
      磯部一夫
    • Organizer
      日本土壌肥料学会2015年度京都大会
    • Place of Presentation
      京都大(京都府京都市)
    • Year and Date
      2015-09-09
    • Related Report
      2015 Annual Research Report
  • [Presentation] 環境中には未知なる脱窒微生物が豊富に存在している2015

    • Author(s)
      磯部一夫、魏巍、妹尾啓史
    • Organizer
      日本地球惑星連合 連合大会2015年大会
    • Place of Presentation
      幕張メッセ(千葉県幕張市)
    • Year and Date
      2015-05-26
    • Related Report
      2015 Annual Research Report
  • [Presentation] 土壌には未知の脱窒微生物が豊富に存在している2015

    • Author(s)
      磯部一夫、魏魏、西澤智康、白鳥豊、大塚重人、妹尾啓史
    • Organizer
      日本土壌微生物学会2015年大会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2015-05-23
    • Related Report
      2015 Annual Research Report
  • [Presentation] Topographical heterogeneity of nitrogen dynamics and microbial communities in forest soil2014

    • Author(s)
      Kazuo Isobe, Nobuhito Ohte, Tomoki Oda, Hiroyu Kato, Sho Murabayashi, Wei Wei, Keishi Senoo
    • Organizer
      15th International Symposium on Microbial Ecology
    • Place of Presentation
      COEX(Souel, Korea)
    • Year and Date
      2014-08-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] Introduction of our project; from metagenome to ecosystem functions2014

    • Author(s)
      Kazuo Isobe
    • Organizer
      6th Korea-Japan-Taiwan International Symposium on Microbial Ecology
    • Place of Presentation
      COEX(Souel, Korea)
    • Year and Date
      2014-08-24
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 微生物生態情報の把握は森林の窒素循環メカニズムの理解を深めるのか2014

    • Author(s)
      磯部一夫、大手信人
    • Organizer
      日本地球惑星科学連合2014年大会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2014-04-30
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Close relationship between nitrogen dynamics and microbial communities in a forest soil2014

    • Author(s)
      Kazuo Isobe
    • Organizer
      6th EAFES International Congress
    • Place of Presentation
      Haiko, China
    • Year and Date
      2014-04-10
    • Related Report
      2014 Annual Research Report
  • [Remarks] 東京大学農学生命科学研究科プレスリリース

    • URL

      http://www.a.u-tokyo.ac.jp/topics/2015/20150312-1.html

    • Related Report
      2014 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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