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Analysis of a novel regulatory mechanism of DNA damage repair using the combination of proteomics and genetics approarch

Research Project

Project/Area Number 26740018
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Risk sciences of radiation and chemicals
Research InstitutionKyoto University

Principal Investigator

Sasanuma Hiroyuki  京都大学, 医学(系)研究科(研究院), 准教授 (00531691)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsDNA損傷 / プロテオミクス / ゲノム編集 / 相同組換え / DNA二重鎖切断修復 / プロテオーム / 遺伝学
Outline of Final Research Achievements

During the period, I have already established the protocol of mass-spectrometry analysis using DT40 and human Tk6 B cell lines. Initially, I introduced 3flag tag at N-terminal region at first exon of BRCA1 using CRISPR/Cas9 genome editing. After pulling down 3FLAG-BRCA1 from whole cell extract, I analyzed the interactors of BRCA1, which plays a important role in DNA damage repair. I successfully identified many facotrs involved in transcription and chromosome segregation. Additionally, I identified the several novel proteins interacting with BRCA1. To investigate the function of novel BRCA1-interactors in DNA metabolism (DNA repair, replication, recombination), I continue generating the mutants of BRCA1 interactors identified here using human B cell line by genome editing technology. It is thought that the aim of this project was achieved.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (9 results)

All 2016 2015

All Journal Article (7 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 7 results,  Acknowledgement Compliant: 6 results,  Open Access: 4 results) Presentation (2 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results)

  • [Journal Article] The role Mre11-Rad50-Nbs1 complex in double-strand-break repair - Myth and Facts2016

    • Author(s)
      Shunichi Takeda, Nguyen Ngoc Hoa, and Hiroyuki Sasanuma,H.
    • Journal Title

      Journal of Radiation Research

      Volume: 1 Pages: 1-1

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The Double-Strand Break Landscape of Meiotic Chromosomes Is Shaped by the Paf1 Transcription Elongation Complex in Saccharomyces cerevisiae2016

    • Author(s)
      Gothwal, S.K., Patel, N.J., Colletti, M.M., Sasanuma, H., Shinohara, M., Hochwagen, A., and Shinohara, A
    • Journal Title

      Genetics

      Volume: 202 Pages: 497-512

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Relative contribution of four nucleases, CtIP, Dna2, Exo1 and Mre11, to the initial step of DNA double-strand break repair by homologous recombination in both the chicken DT40 and human TK6 cell lines2015

    • Author(s)
      Hoa NN, Akagawa R, Yamasaki T, et al., Sasanuma H
    • Journal Title

      Genes to Cells

      Volume: 20 (12) Pages: 1059-1076

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Smarcal1 promotes double-strand-break repair by nonhomologous end-joining2015

    • Author(s)
      Keka IS, Mohiuddin, Maede Y, Rahman MM, Sakuma T, Honma M, Yamamoto T, Takeda S, Sasanuma H
    • Journal Title

      Nucleic Acids Res

      Volume: 43 (13) Pages: 6359-6372

    • NAID

      120005617590

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Abacavir, an anti-HIV-1 drug, targets TDP1-deficient adult T cell leukemia2015

    • Author(s)
      Tada, K., Kobayashi, M*., et al, Sasanuma, H, Takeda, S, Takaori-K, A
    • Journal Title

      Science advances

      Volume: 1

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] BRCA1 and CtIP Are Both Required to Recruit Dna2 at Double-Strand Breaks in Homologous Recombination2015

    • Author(s)
      Hoa NN, Kobayashi J, Omura M, Hirakawa M, Yang SH, Komatsu K, Paull TT, Takeda S, Sasanuma H
    • Journal Title

      Plos one

      Volume: 10 (4)

    • NAID

      120005615636

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] BRCA1 and CtIP are both required to recruit dna2 at double-strand breaks in homologous recombination.2015

    • Author(s)
      Nguyen NH, Kobayashi J, Omura M, Hirakawa M, Yang SH, Komatsu K, Paull TT, Takeda S, Sasanuma H
    • Journal Title

      PLoS One

      Volume: in press

    • NAID

      120005615636

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] BRCA1 and CtIP are Both Required to Recruit Dna2 at Double-Strand Breaks in Homologous Recombination,2015

    • Author(s)
      Hoa NN, Kobayashi J, Omura M, Tsuda M, Hirota K, Komatsu K, Takeda S, Sasanuma H,
    • Organizer
      2nd IFOM-Kyoto univ. joint symposium
    • Place of Presentation
      京都大学
    • Year and Date
      2015-10-06
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ヒト細胞を用いたDNA損傷修復研究の純遺伝学解析2015

    • Author(s)
      笹沼博之、武田俊一
    • Organizer
      Genome damage network workshop
    • Place of Presentation
      伊香保、群馬
    • Year and Date
      2015-06-27
    • Related Report
      2015 Annual Research Report
    • Invited

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Published: 2014-04-04   Modified: 2017-05-10  

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