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Development of next generation environmental sensing system using human iPS cells

Research Project

Project/Area Number 26810100
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Green/Environmental chemistry
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

TANI HIDENORI  国立研究開発法人産業技術総合研究所, 環境管理研究部門, 研究員 (10635329)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2015: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2014: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
KeywordsヒトiPS細胞 / ノンコーディングRNA / 化学物質 / 環境センシング / 長鎖ノンコーディングRNA / 環境ストレス / 環境計測
Outline of Final Research Achievements

In this study, we focused on two biological products as ideal tools for toxicological assessment: long non-coding RNAs (lncRNAs) and human-induced pluripotent stem cells (hiPSCs). lncRNAs are an important class of pervasive non-protein-coding transcripts involved in the molecular mechanisms associated with responses to cellular stresses. hiPSCs possess the capabilities of self-renewal and differentiation into multiple cell types, and they are free of the ethical issues associated with human embryonic stem cells. Here, we identified six novel lncRNAs that respond to model chemical stresses in hiPSCs. Our results indicated that the lncRNAs responded to general and specific chemical stresses. We propose that these lncRNAs have the potential to be surrogate indicators of chemical stress responses in hiPSCs.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (30 results)

All 2016 2015 2014 Other

All Journal Article (8 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 8 results,  Open Access: 6 results,  Acknowledgement Compliant: 3 results) Presentation (19 results) (of which Invited: 1 results) Remarks (1 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Genome-wide gene expression analysis of mouse embryonic stem cells exposed to p-dichlorobenzene2016

    • Author(s)
      H. Tani, J. Takeshita, H. Aoki, R. Abe, A Toyoda, Y. Endo, S. Miyamoto, M. Gamo, and M. Torimura
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: in press Issue: 3 Pages: 329-333

    • DOI

      10.1016/j.jbiosc.2016.02.007

    • NAID

      40020949815

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Identification of hydroxyanthraquinones as novel inhibitors of hepatitis C virus helicase2015

    • Author(s)
      Atsushi Furuta, Masayoshi Tsubuki, Miduki Endoh, Tatsuki Miyamoto, Junichi Tanaka, Kazi Abdus Salam, Nobuyoshi Akimitsu, Hidenori Tani, Atsuya Yamashita, Kohji Moriishi, Masamichi Nakakoshi, Yuji Sekiguchi, Satoshi Tsuneda, Naohiro Noda
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 16 Issue: 8 Pages: 18439-18453

    • DOI

      10.3390/ijms160818439

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance2015

    • Author(s)
      Sho Maekawa, Naoto Imamachi, Takuma Irie, Hidenori Tani, Kyoko Matsumoto, Rena Mizutani, Katsutoshi Imamura, Miho Kakeda, Tetsushi Yada, Sumio Sugano, Yutaka Suzuki and Nobuyoshi Akimitsu.
    • Journal Title

      BMC Genomics

      Volume: 16 Issue: 1 Pages: 154-154

    • DOI

      10.1186/s12864-015-1358-y

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of cytotoxicity-sensitive human cells using overexpression of long non-coding RNAs2015

    • Author(s)
      Tani H, Torimura M.
    • Journal Title

      J Biosci Bioeng

      Volume: 119 Issue: 5 Pages: 604-608

    • DOI

      10.1016/j.jbiosc.2014.10.012

    • NAID

      110009962618

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Genome-wide analysis of long noncoding RNA turnover2015

    • Author(s)
      Hidenori Tani, Naoto Imamachi, Rena Mizutani, Katsutoshi Imamura, Yoendae Kwon, Satoru Miyazaki, Sho Maekawa, Yutaka Suzuki, Nobuyoshi Akimitsu
    • Journal Title

      Methods in Molecular Biology

      Volume: 1262 Pages: 305-20

    • DOI

      10.1007/978-1-4939-2253-6_19

    • ISBN
      9781493922529, 9781493922536
    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide analysis of long noncoding RNA turnover2015

    • Author(s)
      Tani H, Imamachi N, Mizutani R, Imamura K, Kwon Y, Miyazaki S, Maekawa S, Suzuki Y, Akimitsu N.
    • Journal Title

      Methods Mol Biol

      Volume: 1262巻 Pages: 305-320

    • DOI

      10.1007/978-1-4939-2214-7_14

    • ISBN
      9781493922130, 9781493922147
    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] PBDE: Structure-Activity Studies for the Inhibition of Hepatitis C Virus NS3 Helicase.2014

    • Author(s)
      Salam KA, Furuta A, Noda N, Tsuneda S, Sekiguchi Y, Yamashita A, Moriishi K, Nakakoshi M, Tani H, Roy SR, Tanaka J, Tsubuki M, Akimitsu N
    • Journal Title

      Molecules

      Volume: 19 Issue: 4 Pages: 4006-4020

    • DOI

      10.3390/molecules19044006

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells2014

    • Author(s)
      Tani H, Onuma Y, Ito Y, Torimura M.
    • Journal Title

      PLoS One

      Volume: 9巻 Issue: 8 Pages: e106282-e106282

    • DOI

      10.1371/journal.pone.0106282

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] マイクロ流路用金型を用いた細胞培養用グラジエントチップの作成と評価2016

    • Author(s)
      愛澤 秀信、谷 英典、安齋 弘樹、志賀 直子、齊藤 伸寿、鳥村 政基
    • Organizer
      第15回 産総研・産技連 LS-BT合同研究発表会
    • Place of Presentation
      産業技術総合研究所(茨城県)
    • Year and Date
      2016-02-02
    • Related Report
      2015 Annual Research Report
  • [Presentation] ヒトiPS細胞を用いた次世代型水環境診断システムの開発2016

    • Author(s)
      谷 英典
    • Organizer
      InterAqua2016
    • Place of Presentation
      東京ビッグサイト(東京都)
    • Year and Date
      2016-01-28
    • Related Report
      2015 Annual Research Report
  • [Presentation] 伝子発現データに基づく化学物質間の類似度について2015

    • Author(s)
      竹下 潤一、阿部 亮介、豊田 章倫、遠藤 靖典、宮本 定明、谷 英典、青木 寛、鳥村 政基、佐藤 浩昭、蒲生 昌志
    • Organizer
      日本動物実験代替法学会 第28回大会
    • Place of Presentation
      ワークピア横浜(神奈川県)
    • Year and Date
      2015-12-11
    • Related Report
      2015 Annual Research Report
  • [Presentation] マイクロ流路用金型を用いた細胞培養用グラジエントチップの作成と評価2015

    • Author(s)
      愛澤 秀信、谷 英典、安齋 弘樹、志賀 直子、齊藤 伸寿、鳥村 政基
    • Organizer
      第7回マイクロ・ナノ工学シンポジウム
    • Place of Presentation
      新潟コンベンションセンター(新潟県)
    • Year and Date
      2015-10-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] 哺乳動物細胞を用いた化学物質の生体影響評価技術の開発2015

    • Author(s)
      谷 英典
    • Organizer
      第2回E&Eフォーラム
    • Place of Presentation
      産業技術総合研究所(茨城県)
    • Year and Date
      2015-09-02
    • Related Report
      2015 Annual Research Report
  • [Presentation] mRNA機能のオントロジー構造に着目したクラスタリング2015

    • Author(s)
      阿部 亮介、宮本 定明、遠藤 靖典、竹下 潤一、谷 英典
    • Organizer
      ファジィシステムシンポジウム2015
    • Place of Presentation
      電気通信大学(東京都)
    • Year and Date
      2015-09-02
    • Related Report
      2015 Annual Research Report
  • [Presentation] 遺伝子発現データ間の相関関係を特徴づけるRNAの抽出アルゴリズムについて2015

    • Author(s)
      豊田 章倫、遠藤 靖典、宮本 定明、竹下 潤一、谷 英典
    • Organizer
      ファジィシステムシンポジウム2015
    • Place of Presentation
      電気通信大学(東京都)
    • Year and Date
      2015-09-02
    • Related Report
      2015 Annual Research Report
  • [Presentation] 哺乳動物細胞を用いた化学物質の生体影響評価技術の開発2015

    • Author(s)
      谷 英典、小沼 泰子、伊藤 弓弦、竹下 潤一、蒲生 昌志、青木 寛、鳥村 政基、佐藤 浩昭
    • Organizer
      第1回E&Eフォーラム
    • Place of Presentation
      産業技術総合研究所(茨城県)
    • Year and Date
      2015-06-25
    • Related Report
      2015 Annual Research Report
  • [Presentation] ヒトiPS細胞におけるストレスマーカーとしての長鎖ノンコーディングRNAの解析2015

    • Author(s)
      谷 英典、小沼 泰子、伊藤 弓弦、鳥村 政基
    • Organizer
      第14回 産総研・産技連 LS-BT合同研究発表会
    • Place of Presentation
      産業技術総合研究所(茨城県)
    • Year and Date
      2015-02-03
    • Related Report
      2014 Research-status Report
  • [Presentation] ヒトiPS細胞におけるストレスマーカーとしての長鎖ノンコーディングRNAの解析2014

    • Author(s)
      谷 英典、小沼 泰子、伊藤 弓弦、鳥村 政基
    • Organizer
      第37回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2014-11-27
    • Related Report
      2014 Research-status Report
  • [Presentation] Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response2014

    • Author(s)
      Tani H, Torimura M.
    • Organizer
      Cell Symposium: Regulatory RNAs 2014
    • Place of Presentation
      Claremont Hotel & Spa(サンフランシスコ、アメリカ)
    • Year and Date
      2014-10-20
    • Related Report
      2014 Research-status Report
  • [Presentation] ゲノムワイドなRNA分解測定法を利用したUPF1標的遺伝子および基質認識部位の予測2014

    • Author(s)
      今町 直登、谷 英典、入江 拓磨、鈴木 穣、秋光 信佳
    • Organizer
      第13 回次世代を担う若手ファーマ・バイオフォーラム2014
    • Place of Presentation
      富山国際会議場(富山県)
    • Year and Date
      2014-09-20
    • Related Report
      2014 Research-status Report
  • [Presentation] Genome-wide gene expression analysis by RNA-seq in murine embryonic stem cells2014

    • Author(s)
      Tani H, Takeshita J, Aoki H, Gamo M, Torimura M.
    • Organizer
      9th World Congress on Alternatives and Animal Use in the Life Sciences
    • Place of Presentation
      Hilton Prague(プラハ、チェコ)
    • Year and Date
      2014-08-27
    • Related Report
      2014 Research-status Report
  • [Presentation] ゲノムワイドなRNA分解測定法を利用した UPF1標的遺伝子および基質認識部位の予測2014

    • Author(s)
      今町 直登、谷 英典、今村 克俊、入江 拓磨、鈴木 穣、秋光 信佳
    • Organizer
      ゲノム支援拡大班会議
    • Place of Presentation
      神戸ポートピアホテル(兵庫県)
    • Year and Date
      2014-08-20
    • Related Report
      2014 Research-status Report
  • [Presentation] Long non-coding RNAs as surrogate indicators for environmental stress response in human cells2014

    • Author(s)
      Tani H.
    • Organizer
      Workshop on Advanced Technologies for Wastewater Reclamation and Reuse
    • Place of Presentation
      清華大学(北京、中国)
    • Year and Date
      2014-08-19
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Identification of cis-regulatory elements within UPF1 target transcripts2014

    • Author(s)
      Imamachi N, Tani H, Mizutani R, Imamura K, Irie T, Suzuki Y, Akimitsu N.
    • Organizer
      The 9th FASEB meeting
    • Place of Presentation
      Big Sky(モンタナ、アメリカ)
    • Year and Date
      2014-07-08
    • Related Report
      2014 Research-status Report
  • [Presentation] ヒトiPS細胞を用いた化学物質の安全性評価及び迅速計測技術の開発2014

    • Author(s)
      谷 英典、小沼 泰子、伊藤 弓弦、竹下 潤一、蒲生 昌志、青木 寛、鳥村 政基
    • Organizer
      第21回E&Eフォーラム
    • Place of Presentation
      産業技術総合研究所(茨城県)
    • Year and Date
      2014-06-18
    • Related Report
      2014 Research-status Report
  • [Presentation] Identification of cis-regulatory element within UPF1 target transcripts2014

    • Author(s)
      Imamachi N, Tani H, Mizutani R, Imamura K, Irie T, Suzuki Y, Akimitsu N.
    • Organizer
      RNA 2014
    • Place of Presentation
      Centre des Congres de Quebec(ケベック、カナダ)
    • Year and Date
      2014-06-07
    • Related Report
      2014 Research-status Report
  • [Presentation] ゲノムワイドなRNA分解測定法を利用したUPF1標的遺伝子および基質認識部位の予測2014

    • Author(s)
      今町 直登、谷 英典、入江 拓磨、鈴木 穣、秋光 信佳
    • Organizer
      第14回 東京大学生命科学シンポジウム BIO UT
    • Place of Presentation
      東京大学(東京都)
    • Year and Date
      2014-04-26
    • Related Report
      2014 Research-status Report
  • [Remarks] Hidenori TANI - 谷 英典

    • URL

      https://staff.aist.go.jp/h.tani/

    • Related Report
      2014 Research-status Report
  • [Patent(Industrial Property Rights)] 細胞内RNA分解酵素のin vivo阻害測定方法2015

    • Inventor(s)
      谷 英典、鳥村 政基、佐藤 浩昭
    • Industrial Property Rights Holder
      谷 英典、鳥村 政基、佐藤 浩昭
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2015-147125
    • Filing Date
      2015-07-24
    • Related Report
      2015 Annual Research Report
  • [Patent(Industrial Property Rights)] 核酸を用いたストレス高感受性細胞の作製方法2014

    • Inventor(s)
      谷 英典、鳥村 政基
    • Industrial Property Rights Holder
      谷 英典、鳥村 政基
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2014-125587
    • Filing Date
      2014-06-18
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2017-05-10  

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