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Integrating reductive and synthetic approaches in biology using artificial cells

Research Project

Project/Area Number 26830139
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field System genome science
Research InstitutionKyoto University (2015)
Osaka University (2014)

Principal Investigator

Aoki Wataru  京都大学, (連合)農学研究科(研究院), 助教 (10722184)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords合成生物学 / 構成的遺伝学 / Synthetic biology / 遺伝学
Outline of Final Research Achievements

We propose ‘synthetic genetics’ as a novel methodology that integrates reductive and synthetic approaches used in life science research.‘Synthetic genetics’ enables determinations of sets of genes required for the functioning of any biological subsystem. This method utilizes artificial cell-like compartments, including a randomly introduced whole gene library, strictly defined components for in vitro transcription and translation, and a reporter that fluoresces ‘only when a particular function of a target biological subsystem is active.’ The set of genes necessary for the target biological subsystem can be identified by isolating fluorescent artificial cells and multiplex next-generation sequencing of genes included in these cells.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (10 results)

All 2016 2015 2014

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (7 results) (of which Int'l Joint Research: 4 results,  Invited: 2 results)

  • [Journal Article] Centrifugal microfluidic platform for single-cell level cardiomyocyte-based drug profiling and screening2015

    • Author(s)
      Espulgar W, Aoki W, Ikeuchi T, Mita D, Saito M, Lee JK, Tamiya E
    • Journal Title

      Lab on a Chip

      Volume: 15 Issue: 17 Pages: 3572-3580

    • DOI

      10.1039/c5lc00652j

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single cell trapping and cell-cell interaction monitoring of cardiomyocytes in a designed microfluidic chip2015

    • Author(s)
      Espulgar W, Yamaguchi Y, Aoki W, Mita D, Saito M, Lee JK, Tamiya E
    • Journal Title

      Sensors and Actuators B: Chemical

      Volume: 207 Pages: 43-50

    • DOI

      10.1016/j.snb.2014.09.068

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Integrating reductive and synthetic approaches in biology using man-made cell-like compartments.2014

    • Author(s)
      Aoki W, M Saito, R Manabe, H Mori, Y Yamaguchi, & E Tamiya
    • Journal Title

      Scientific reports

      Volume: 4 Issue: 1 Pages: 4722-4722

    • DOI

      10.1038/srep04722

    • NAID

      120005830854

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Integrating reductive and synthetic approaches in biology using man-made cell-like compartments2016

    • Author(s)
      Wataru Aoki, Shun Komura, Eiichi Tamiya, Mitsuyoshi Ueda
    • Organizer
      ASBMB
    • Place of Presentation
      アメリカ、サンディエゴ
    • Year and Date
      2016-04-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Integrating reductive and synthetic approaches in biology using artificial cell2016

    • Author(s)
      Wataru Aoki
    • Organizer
      Integration of Synthetic Biology and Systems Biology of Microbes
    • Place of Presentation
      奈良先端大学
    • Year and Date
      2016-03-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Synthetic approaches for understanding biological phenomena2016

    • Author(s)
      Wataru Aoki, Mitsuyoshi Ueda
    • Organizer
      University of Bourdeaux-Kyoto University Mini-Symposium on Biomolecular Science
    • Place of Presentation
      京都大学
    • Year and Date
      2016-01-25
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Integrating reductive and synthetic approaches in biology using man-made cell-like compartments2015

    • Author(s)
      Wataru Aoki、Masato Saito、Eiichi Tamiya
    • Organizer
      Pacifichem
    • Place of Presentation
      ハワイ、ホノルル
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 人工細胞と次世代シーケンサーを基盤技術として生命科学における還元的方法と構成的方法を融合する2014

    • Author(s)
      青木 航、齋藤 真人、眞鍋 理一郎、森 浩禎、山口 佳則、民谷 栄一
    • Organizer
      分子生物学会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2014-11-26
    • Related Report
      2014 Research-status Report
  • [Presentation] 人工細胞と次世代シーケンサーを基盤技術とし、 還元的方法と構成的方法を融合する2014

    • Author(s)
      青木 航、齋藤 真人、眞鍋 理一郎、森 浩禎、山口 佳則、民谷 栄一
    • Organizer
      細胞を創る会
    • Place of Presentation
      東京大学弥生講堂(東京都文京区)
    • Year and Date
      2014-11-14
    • Related Report
      2014 Research-status Report
  • [Presentation] 人工細胞と次世代シーケンサーを基盤技術とした、 生命科学における還元的方法と構成的方法の融合2014

    • Author(s)
      青木 航、齋藤 真人、眞鍋 理一郎、森 浩禎、山口 佳則、民谷 栄一
    • Organizer
      無細胞生命科学研究会
    • Place of Presentation
      大阪大学医学部銀杏会館(大阪府吹田市)
    • Year and Date
      2014-10-08
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2017-05-10  

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