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Structure-function studies of B12-containing photosensor proteins

Research Project

Project/Area Number 26840027
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionInstitute for Molecular Science

Principal Investigator

Muraki Norifumi  分子科学研究所, 生命・錯体分子科学研究領域, 助教 (20723828)

Research Collaborator Aono Shigetoshi  
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
KeywordsX線結晶解析 / 光センサー / 光受容体 / 結晶構造解析 / ビタミンB12 / 転写因子 / 結晶構造解析法 / センサータンパク質 / 光応答
Outline of Final Research Achievements

Recently, a novel transcription regulator CarH has been characterized as a cobalamin-dependent photosensor. Though it is reported that CarH regulates the biosynthesis of carotenoids in response to light, the detail molecular mechanisms of light sensing and functional regulation of CarH in response to light were unclear.
We determined the crystal structure of adenosylcobalamin-bound CarH from Thermus thermophilus.
CarH consists of the N-terminal DNA binding domain and the C-terminal sensor domain. The adenosyl group of adenosylcobalamin stabilizes the conformation of the sensor domain. We assumed that loss of adenosyl group upon photosensing results in change of the quaternary structure from tetramer to monomer.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (16 results)

All 2016 2014

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (14 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results)

  • [Journal Article] Structural Characterization of Heme Environmental Mutants of CgHmuT that Shuttles Heme Molecules to Heme Transporters2016

    • Author(s)
      N. Muraki, C. Kitatsuji, M. Ogura, T. Uchida, K. Ishimori, and S. Aono
    • Journal Title

      Int. J. Mol. Sci.

      Volume: 17 Issue: 6 Pages: 829-839

    • DOI

      10.3390/ijms17060829

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Structural Basis for Heme Recognition by HmuT Responsible for Heme Transport to the Heme Transporter in Corynebacterium glutamicum2016

    • Author(s)
      Norifumi Muraki
    • Journal Title

      Chemistry Letters

      Volume: 45 Issue: 1 Pages: 24-26

    • DOI

      10.1246/cl.150894

    • NAID

      130005118778

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Crystal structure of a photosensor CarH using adenosylcobalamin as a photosensing unit2016

    • Author(s)
      村木則文、青野重利
    • Organizer
      8th Asian Biological Inorganic Chemistry Conference
    • Place of Presentation
      オークランド大学 (オークランド, ニュージーランド)
    • Year and Date
      2016-12-04
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 新規な光受容体型転写因子CarHの結晶構造解析2016

    • Author(s)
      村木則文、青野重利
    • Organizer
      平成28年度日本結晶学会年会
    • Place of Presentation
      茨城県立県民文化センター(茨城県水戸市)
    • Year and Date
      2016-11-21
    • Related Report
      2016 Annual Research Report
  • [Presentation] Structural analysis of heme acquisition proteins in Corynebacterium2016

    • Author(s)
      村木則文、青野重利
    • Organizer
      The 9th Japan-Korea Seminars on Biomolecular Science: Experiments and Simulations
    • Place of Presentation
      慶州コモドホテル(慶州, 韓国)
    • Year and Date
      2016-11-14
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ビタミンB12を光センサーとして用いる転写調節因子の構造基盤2016

    • Author(s)
      村木則文、青野重利
    • Organizer
      第10回バイオ関連化学シンポジウム
    • Place of Presentation
      石川県立もてなしドーム(石川県金沢市)
    • Year and Date
      2016-09-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] 光センサーとして機能するコバラミン含有型転写因子CarHの構造と機能2016

    • Author(s)
      村木則文、青野重利
    • Organizer
      第26回金属の関与する生体関連反応シンポジウム(SRM2016)
    • Place of Presentation
      北海道大学(北海道札幌市)
    • Year and Date
      2016-06-17
    • Related Report
      2016 Annual Research Report
  • [Presentation] 光センサーとして機能するコバラミン含有型転写因子CarHの構造と機能2016

    • Author(s)
      村木則文、青野重利
    • Organizer
      第26回金属の関与する生体関連反応シンポジウム(SRM2016)
    • Place of Presentation
      北海道・札幌市・北海道大学
    • Year and Date
      2016-06-17
    • Related Report
      2015 Research-status Report
  • [Presentation] ビタミンB12を利用した光受容体型転写因子CarHの構造解析2016

    • Author(s)
      村木則文、青野重利
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡県福岡市)
    • Year and Date
      2016-06-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] ビタミンB12を利用した光受容体型転写因子CarHの構造解析2016

    • Author(s)
      村木則文、青野重利
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡県・福岡市・福岡国際会議場
    • Year and Date
      2016-06-07
    • Related Report
      2015 Research-status Report
  • [Presentation] コバラミンを有する新規な光受容体CarHの構造と機能2016

    • Author(s)
      村木則文、青野重利
    • Organizer
      日本化学会 第96春季年会
    • Place of Presentation
      京都府・京田辺市・同志社大学
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] Structural basis of heme recognition for HmuT from Corynebacterium glutamicum2014

    • Author(s)
      N. Muraki
    • Organizer
      the 7th Asian Biological Inorganic Chemistry Conference
    • Place of Presentation
      Crowne Plaza Surfers Paradise, Gold Coast, Australia
    • Year and Date
      2014-11-30 – 2014-12-05
    • Related Report
      2014 Research-status Report
  • [Presentation] Crystal structure of HmuT reveals heme recognition2014

    • Author(s)
      N. Muraki
    • Organizer
      the 7th Korea-Japan Seminars on Biomolecular Sciences: Experiments and Simulations
    • Place of Presentation
      Korea Institute for Advanced Study, Seoul, Korea
    • Year and Date
      2014-11-26 – 2014-11-28
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] ヘム取込み系で機能するHmuTのヘム認識機構2014

    • Author(s)
      村木則文
    • Organizer
      平成26年度日本結晶学会年会
    • Place of Presentation
      東京大学, 文京区, 東京都
    • Year and Date
      2014-11-01 – 2014-11-03
    • Related Report
      2014 Research-status Report
  • [Presentation] Structural basis for heme recognition by HmuT proteins in bacterial heme acquisition systems2014

    • Author(s)
      N. Muraki, S. Aono
    • Organizer
      錯体化学会第64回討論会
    • Place of Presentation
      中央大学, 文京区, 東京都
    • Year and Date
      2014-09-18 – 2014-09-20
    • Related Report
      2014 Research-status Report
  • [Presentation] Corynebacterium glutamicum由来ヘム輸送タンパク質HmuTの結晶構造解析2014

    • Author(s)
      村木則文
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホール マリネリア, 横浜市, 神奈川県
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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