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Developmental biology of the appendicularian, Oikopleura dioica: Tool development and study of developmental phenomena.

Research Project

Project/Area Number 26840079
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Developmental biology
Research InstitutionOsaka University

Principal Investigator

Onuma Takeshi  大阪大学, 理学(系)研究科(研究院), 助教 (30632103)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywordsオタマボヤ / 脊索動物 / 胚発生 / 器官形成 / ゲノム / トランスクリプトーム / 細胞系譜 / ライブイメージング / 発生 / RNA-seq / 発生遺伝学 / イメージング / ノックダウン
Outline of Final Research Achievements

The apppendicularian, Oikopleura dioica, is a planktonic tunicate with a chordate body plan. It is proposed as a simplest model chromate because of its transparency, small cell number, simple body organization, and rapid development. This study aimed to develop genetic approaches and study developmental phenomena of O. dioica. Several major progresses are made during the 2 years for research period: (1) RNA-seq and de novo assemble of mRNAs in eggs and larvae were carried out; (2) A new gene knockdown phenomena induced by double-stranded DNA was found and reported as DNAi; (3) A morphological atlas of adults based on scanning electron microscopic observation was generated; (4) Trunk epidermis patterning and assynmetries of cell lineage of adult body were described with the aid of live imaging techniques; (5) A easy-to-use protocol to detect mRNAs in embryos was developed; and (6) Genome and developmental transcriptome databases are under constructions.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (26 results)

All 2016 2015 2014 Other

All Journal Article (5 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 3 results,  Acknowledgement Compliant: 3 results) Presentation (20 results) (of which Int'l Joint Research: 4 results,  Invited: 7 results) Remarks (1 results)

  • [Journal Article] 実験動物紹介: ワカレオタマボヤ.2016

    • Author(s)
      岸香苗, 西田宏記, 小沼健
    • Journal Title

      比較内分泌学

      Volume: 157 Pages: 1-4

    • Related Report
      2015 Annual Research Report
    • Acknowledgement Compliant
  • [Journal Article] 脊索動物ワカレオタマボヤにおける2つの遺伝子サイレンシング機構: RNA interferenceとDNA interference.2016

    • Author(s)
      表迫竜也, 西田宏記, 小沼健
    • Journal Title

      比較内分泌学

      Volume: 157 Pages: 5-7

    • NAID

      130005128694

    • Related Report
      2015 Annual Research Report
    • Acknowledgement Compliant
  • [Journal Article] DNA-induced gene silencing in the appendicularian Oikopleura dioica.2015

    • Author(s)
      Omotezako, T., Onuma, T. A., and Nishida, H.
    • Journal Title

      Proc. R. Soc. B

      Volume: 282 Issue: 1807 Pages: 20150435-20150435

    • DOI

      10.1098/rspb.2015.0435

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Maternal and zygotic transcriptomes in the appendicularian, Oikopleura dioica: Novel protein-encoding genes, intra-species sequence variations, and trans-spliced RNA leader.2015

    • Author(s)
      Wang K., Omotezako T., Kishi K., Nishida H., and Onuma T. A.
    • Journal Title

      Development Genes and Evolution

      Volume: 225(3) Issue: 3 Pages: 149-159

    • DOI

      10.1007/s00427-015-0502-7

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Long-distance cell migrations during larval development in the appendicularian, Oikopleura dioica.2014

    • Author(s)
      Kanae Kishi, Takeshi A. Onuma, and Hiroki Nishida.
    • Journal Title

      Developmental Biology

      Volume: 395(2) Issue: 2 Pages: 299-306

    • DOI

      10.1016/j.ydbio.2014.09.006

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] オタマボヤをもちいた発生学研究の開拓と新展開2016

    • Author(s)
      小沼健
    • Organizer
      Joint meeting of the 22nd International Congress of Zoology and the 87th meeting of the Zoological Society of Japan.
    • Place of Presentation
      沖縄, OIST
    • Year and Date
      2016-11-14
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] オタマボヤにおける新規の遺伝子抑制現象 (DNAi) ならびに性分化・配偶子産生研究の展望.2016

    • Author(s)
      小沼健
    • Organizer
      生有研シンポジウム「性と成熟:その普遍性と多様性を支える機構」
    • Place of Presentation
      京都, サントリーワールドリサーチセンター
    • Year and Date
      2016-02-05
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Epidermal patterning and lineage analysis of the appendicularian, Oikopleura dioica.2015

    • Author(s)
      岸香苗, 林桃子, 小沼健, 西田宏記.
    • Organizer
      日本動物学会第86回大会
    • Place of Presentation
      新潟, 朱鷺メッセ
    • Year and Date
      2015-09-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Left-right asymmetries in cell lineages during organogenesis of the appendicularian, Oikopleura dioica.2015

    • Author(s)
      小沼健, 林桃子, 西田宏記.
    • Organizer
      日本動物学会第86回大会
    • Place of Presentation
      新潟, 朱鷺メッセ
    • Year and Date
      2015-09-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Maternal and zygotic transcriptomes in the appendicularian, Oikopleura dioica.2015

    • Author(s)
      Kai Wang, 表迫竜也, 岸香苗, 西田宏記, 小沼健.
    • Organizer
      日本動物学会第86回大会
    • Place of Presentation
      新潟, 朱鷺メッセ
    • Year and Date
      2015-09-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Expression of thyroid and endostyle related genes in Oikopleura dioica.2015

    • Author(s)
      平尾早智澄, Kai Wang, 小沼健, 西田宏記, 小笠原道生.
    • Organizer
      日本動物学会第86回大会
    • Place of Presentation
      新潟, 朱鷺メッセ
    • Year and Date
      2015-09-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] “もっとも単純な体の脊索動物” をもちいて生物学の新たな領域を開拓する.2015

    • Author(s)
      小沼健
    • Organizer
      ユニークな少数派生物を扱う若手研究者が最先端アプローチを勉強する会
    • Place of Presentation
      岡崎, 岡崎カンファレンスセンター
    • Year and Date
      2015-08-18
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Internal and external morphology of adults of the appendicularian, Oikopleura dioica: A SEM study.2015

    • Author(s)
      Onuma TA, Isobe M, Nishida H.
    • Organizer
      The 8th International Tunicate Meeting
    • Place of Presentation
      Aomori, Aomori City Cultural Hall
    • Year and Date
      2015-07-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Morphogenesis and patterning of the trunk epidermis of the appendicularian, Oikopleura dioica.2015

    • Author(s)
      Kishi K, Hayashi M, Onuma TA, Nishida H.
    • Organizer
      The 8th International Tunicate Meeting
    • Place of Presentation
      Aomori, Aomori City Cultural Hall
    • Year and Date
      2015-07-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Maternal and zygotic transcriptomes Maternal and zygotic transcriptomes in the appendicularian, Oikopleura dioica: Novel protein-encoding genes, intra-species sequence variations, and trans-spliced RNA leader.2015

    • Author(s)
      Wang K, Omotezako T, Kishi K, Nishida H, Onuma TA.
    • Organizer
      The 8th International Tunicate Meeting
    • Place of Presentation
      Aomori, Aomori City Cultural Hall
    • Year and Date
      2015-07-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] DNA interference: new gene silencing method in the appendicularian, Oikopleura dioica2015

    • Author(s)
      Omotezako T, Onuma TA, Nishida H.
    • Organizer
      The 8th International Tunicate Meeting
    • Place of Presentation
      Aomori, Aomori City Cultural Hall
    • Year and Date
      2015-07-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Oikoplastic epidermal patterning in the trunk of the appendicularian, Oikopleura dioica.2015

    • Author(s)
      岸香苗, 林桃子, 小沼健, 西田宏記.
    • Organizer
      第48回日本発生生物学会
    • Place of Presentation
      筑波, つくば国際会議場
    • Year and Date
      2015-06-02
    • Related Report
      2015 Annual Research Report 2014 Research-status Report
  • [Presentation] Internal and external structures of the appendicularian, Oikopleura dioica.2015

    • Author(s)
      小沼健, 磯部美穂, 西田宏記.
    • Organizer
      第48回日本発生生物学会
    • Place of Presentation
      筑波, つくば国際会議場
    • Year and Date
      2015-06-02
    • Related Report
      2015 Annual Research Report 2014 Research-status Report
  • [Presentation] Maternal and zygotic transcriptomes Maternal and zygotic transcriptomes in the appendicularian, Oikopleura dioica: Novel protein-encoding genes, intra-species sequence variations, and trans-spliced RNA leader.2015

    • Author(s)
      Wang K, Omotezako T, Kishi K, Nishida H, Onuma TA.
    • Organizer
      第48回日本発生生物学会
    • Place of Presentation
      筑波, つくば国際会議場
    • Year and Date
      2015-06-02
    • Related Report
      2015 Annual Research Report
  • [Presentation] ワカレオタマボヤ幼生の形態形成過程.2015

    • Author(s)
      岸香苗, 林桃子, 小沼健, 西田宏記.
    • Organizer
      2015年度日本動物学会近畿支部研究発表会
    • Place of Presentation
      奈良, 奈良女子大学
    • Year and Date
      2015-05-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 魚類におけるGnRH系の発達・機能についての統合的研究および「最も単純な体の脊索動物」オタマボヤをもちいた発生学研究の近況2014

    • Author(s)
      小沼健
    • Organizer
      琉球大学専攻セミナー
    • Place of Presentation
      沖縄, 琉球大学
    • Year and Date
      2014-11-26
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] オタマボヤをもちいた発生学研究の近況 (西田宏記研究室, オタマボヤグループ)2014

    • Author(s)
      表迫竜也, 岸香苗, 小沼健.
    • Organizer
      ホヤ研究会2014
    • Place of Presentation
      東京, 筑波大学
    • Year and Date
      2014-10-13 – 2014-10-14
    • Related Report
      2014 Research-status Report
  • [Presentation] Mechanisms of three long-distance migrations during larval development of the appendicularian, Oikopleura dioica.2014

    • Author(s)
      岸香苗, 小沼健, 西田宏記.
    • Organizer
      日本動物学会第85回大会
    • Place of Presentation
      仙台, 東北大学川内北キャンパス
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Research-status Report
  • [Presentation] Development of left-right asymmetry in the appendicularian, O. dioica: Fate mapping of the left or right blastomere of two-cell stage embryo.2014

    • Author(s)
      林桃子, 小沼健, 西田宏記
    • Organizer
      日本動物学会第85回大会
    • Place of Presentation
      仙台, 東北大学川内北キャンパス
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Research-status Report
  • [Presentation] Scanning electron microscopic observation of the appendicularian, Oikopleura dioica.2014

    • Author(s)
      小沼健, 磯部美穂, 西田宏記.
    • Organizer
      日本動物学会第85回大会
    • Place of Presentation
      仙台, 東北大学川内北キャンパス
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Research-status Report
  • [Remarks] 世界初!多細胞動物が外来DNAから細胞を守る仕組みを発見!

    • URL

      http://resou.osaka-u.ac.jp/ja/research/2015/20150518_1

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2017-05-10  

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