• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Mathematical modeling of collective cell movement

Research Project

Project/Area Number 26840085
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Developmental biology
Research InstitutionKanazawa University (2015-2016)
The Institute of Physical and Chemical Research (2014)

Principal Investigator

Uriu Koichiro  金沢大学, 自然システム学系, 助教 (90726241)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Fiscal Year 2016: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2015: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords細胞移動 / 数理モデル / 画像解析 / 遺伝子発現リズム / 同期 / 時間スケール / シミュレーション / トラッキング / 位相振動子 / cell mixing / 数値シミュレーション / 国際情報交換 / ブエノスアイレス / ロンドン
Outline of Final Research Achievements

We studied collective cell movement in development using mathematical modeling and embryonic imaging data. We developed a novel nuclear segmentation algorithm for cell tracking and a method to validate the accuracy of segmentation algorithms. Using the approach, we quantified cell movement in the zebrafish presomitic mesoderm and constructed a physical model that reproduced observed cell movement patterns. Furthermore, by using mathematical models, we revealed that collective cell movement in the tissue could enhance synchronization of gene expression rhythms across a cell population, suggesting a biological relevance of collective cell movement in development.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (17 results)

All 2016 2015 2014 Other

All Int'l Joint Research (4 results) Journal Article (4 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 4 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (9 results) (of which Int'l Joint Research: 2 results)

  • [Int'l Joint Research] ブエノスアイレス大学(アルゼンチン)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] University College London(英国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] ブエノスアイレス大学(アルゼンチン)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] University College London(英国)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Object segmentation and ground truth in 3D embryonic imaging2016

    • Author(s)
      Bhavna Rajasekaran, Koichiro Uriu, Guillaume Valentin, Jean-Yves Tinevez, Andrew C. Oates
    • Journal Title

      PLoS One

      Volume: 11 Issue: 6 Pages: e0150853-e0150853

    • DOI

      10.1371/journal.pone.0150853

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genetic oscillators in development2016

    • Author(s)
      Koichiro Uriu
    • Journal Title

      Development, Growth & Differentiation

      Volume: 58 Issue: 1 Pages: 16-30

    • DOI

      10.1111/dgd.12262

    • NAID

      120005741598

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Collective cell movement promotes synchronization of coupled genetic oscillators2014

    • Author(s)
      Koichiro Uriu and Luis G. Morelli
    • Journal Title

      Biophysical Journal

      Volume: 107 Issue: 2 Pages: 514-526

    • DOI

      10.1016/j.bpj.2014.06.011

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Interplay between intercellular signaling and cell movement in development2014

    • Author(s)
      Koichiro Uriu, Luis G. Morelli and Andrew C. Oates
    • Journal Title

      Seminars in Cell and Developmental Biology

      Volume: 35 Pages: 66-72

    • DOI

      10.1016/j.semcdb.2014.05.011

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] 細胞移動が分節時計の同期に与える影響をイメージングデータと数理モデルで明らかにする2016

    • Author(s)
      瓜生耕一郎
    • Organizer
      日本発生生物学会秋季シンポジウム2016
    • Place of Presentation
      静岡県三島市三島市民文化会館
    • Year and Date
      2016-10-19
    • Related Report
      2016 Annual Research Report
  • [Presentation] Quantification of relative cellular movement and mathematical modeling in vertebrate somitogenesis2015

    • Author(s)
      Koichiro Uriu
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド、兵庫
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] Quantification and mathematical modeling of the effect of cellular movement on oscillator synchronization in vertebrate somitogenesis2015

    • Author(s)
      Koichiro Uriu, Bhavna Rajasekaran, Luis G. Morelli, Andrew C. Oates
    • Organizer
      The 26th CDB meeting
    • Place of Presentation
      理化学研究所多細胞システム形成研究センター、兵庫
    • Year and Date
      2015-09-08
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Modeling cellular motion in vertebrate somitogenesis based on embryonic imaging data2015

    • Author(s)
      Koichiro Uriu
    • Organizer
      2015年日本数理生物学会年会/日中韓数理生物学コロキウム合同大会
    • Place of Presentation
      同志社大学、京都
    • Year and Date
      2015-08-26
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Relative cellular motion in vertebrate somitogenesis2015

    • Author(s)
      Koichiro Uriu
    • Organizer
      日本発生生物学会年会
    • Place of Presentation
      つくば国際会議場、茨城
    • Year and Date
      2015-06-02
    • Related Report
      2015 Research-status Report
  • [Presentation] Synchronization of coupled genetic oscillators promoted by collective cell movement2015

    • Author(s)
      Koichiro Uriu
    • Organizer
      CDB Symposium 2015 Time in Development
    • Place of Presentation
      Kobe, Japan
    • Year and Date
      2015-03-23 – 2015-03-25
    • Related Report
      2014 Research-status Report
  • [Presentation] Collective cell movement promotes synchronization of coupled genetic oscillators2014

    • Author(s)
      Koichiro Uriu
    • Organizer
      The Joint Meeting of the Japanese Society for Mathematical Biology and the Society for Mathematical Biology 2014
    • Place of Presentation
      Osaka, Japan
    • Year and Date
      2014-07-28 – 2014-08-01
    • Related Report
      2014 Research-status Report
  • [Presentation] Collective cell movement promotes synchronization of coupled genetic oscillators2014

    • Author(s)
      Koichiro Uriu
    • Organizer
      The 9th European Conference on Mathematical and Theoretical Biology
    • Place of Presentation
      Gothenburg, Sweden
    • Year and Date
      2014-06-15 – 2014-06-19
    • Related Report
      2014 Research-status Report
  • [Presentation] Collective cell movement promotes synchronization of the segmentation clock2014

    • Author(s)
      瓜生耕一郎
    • Organizer
      第47回日本発生生物学会年会
    • Place of Presentation
      愛知
    • Year and Date
      2014-05-27 – 2014-05-30
    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2022-02-16  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi