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Historical biogeography of fishes of the South China Sea in relation to the Pleistocene glacial-interglacial cycles

Research Project

Project/Area Number 26840131
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biodiversity/Systematics
Research InstitutionTokai University (2016)
Research Institute for Humanity and Nature (2014-2015)

Principal Investigator

Muto Nozomu  東海大学, 生物学部, 講師 (50724267)

Co-Investigator(Renkei-kenkyūsha) ISHIKAWA Satoshi  総合地球環境学研究所, 教授 (40433908)
MOTOMURA Hiroyuki  鹿児島大学, 総合研究博物館, 教授 (90433086)
TAKESHIMA Hirohiko  総合地球環境学研究所, 特任助教 (50573086)
Research Collaborator MUTO Fumihito  東海大学, 海洋学部, 准教授
Babaran Ricardo P.  フィリピン大学, 教授
KAKIOKA Ryo  国立遺伝学研究所, 研究員
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2016: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords南シナ海 / 更新世 / 系統地理 / 魚類 / ミトコンドリアDNA / マイクロサテライト / 種分化 / 二次的接触
Outline of Final Research Achievements

We aimed to clarify historical processes contributing to the marine fish diversity in the South China Sea, focusing on the Pleistocene glacial-interglacial cycles. Mitochondrial DNA sequencing was employed to infer historical population dynamics in 18 selected fish species. In some species, specimens from the South China Sea were separated into two divergent clades on mtDNA gene tree, suggesting that they have experienced historical divergence due to the sea level changes in the Pleistocene, followed by secondary contact.
For a subset of the aforementioned species, nuclear DNA divergence was tested using microsatellite genotyping. The species tested exhibited clear nuclear divergence between the two mtDNA clades, indicating that they are representing separate species. Taken together, our results showed that the Pleistocene glacial-interglacial cycles have contributed to the present marine fish diversity in the South China Sea, both at the intraspecific- and the species-level.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (30 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (9 results) Journal Article (6 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 6 results,  Open Access: 1 results,  Acknowledgement Compliant: 5 results) Presentation (13 results) (of which Int'l Joint Research: 6 results,  Invited: 1 results) Book (2 results)

  • [Int'l Joint Research] フィリピン大学ビサヤス校(フィリピン)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] ベトナム海洋環境・資源研究 所(ベトナム)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] タイ国立博物館(タイ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] トレンガヌ大学(マレーシア)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] 国立海洋生物博物館(台湾)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] University of the Philippines Visayas(フィリピン)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] National Science Museum/SEAFDEC(タイ)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] Institute of Mar. Environ. Resour.(ベトナム)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] Universiti Malaysia Terengganu/Universiti Putra Malaysia(マレーシア)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Rapid and effective isolation of candidate sequences for development of microsatellite markers in 30 fish species by using kit-based target capture and multiplexed parallel sequencing2017

    • Author(s)
      Hirohiko Takeshima, Nozomu Muto, Yasuyuki Sakai, Naoya Ishiguro, Keiichiro Iguchi, Satoshi Ishikawa, Mutsumi Nishida
    • Journal Title

      Conservation Genetics Resources

      Volume: online first Issue: 3 Pages: 1-12

    • DOI

      10.1007/s12686-017-0699-z

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A new species of labrid fish Oxycheilinus samurai from the western Pacific Ocean.2017

    • Author(s)
      Fukui Y, Muto N, Motomura H.
    • Journal Title

      Ichthyological Research

      Volume: 未定 Issue: 2 Pages: 212-220

    • DOI

      10.1007/s10228-016-0561-4

    • NAID

      40021169708

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Rapid and cost-effective molecular identification of the three mackerel species of the genus Rastrelliger (Perciformes: Scombridae) using PCR-RFLP analysis.2017

    • Author(s)
      Muto N, Takeshima H, Kakioka R, Alama UB, Guzman AMT, Cruz RS, Gaje AC, Traifalgar RFM, Motomura H, Muto F, Babaran RP, Ishikawa S.
    • Journal Title

      Marine Biodiversity

      Volume: 未定 Issue: 2 Pages: 609-611

    • DOI

      10.1007/s12526-016-0537-7

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Stable isotope analysis suggests the existence of multiple populations of streaked spinefoot (Siganus javus L.) in Bandon Bay, Southern Thailand.2016

    • Author(s)
      Okamoto Y, Muto N, Kon K, Watanabe K, Yoshikawa T, Salaenoi J, Ishikawa S.
    • Journal Title

      International Aquatic Research

      Volume: 8 Pages: 169-178

    • NAID

      120006346266

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Genetic and morphological differences among the three species of the genus Rastrelliger (Perciformes: Scombridae).2016

    • Author(s)
      Muto N, Alama UB, Hata H, Guzman AMT, Cruz R, Gaje A, Traifalgar RFM, Kakioka R, Takeshima H, Motomura H, Muto F, Babaran RP, Ishikawa S.
    • Journal Title

      Ichthyological Research

      Volume: 63 Pages: 275-287

    • NAID

      40020815940

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Genetic and morphological differences among the three species of the genus Rastrelliger (Perciformes: Scombridae).2016

    • Author(s)
      Nozomu Muto, Ulysses B. Alama, Harutaka Hata, Armi May T. Guzman, Ramon Cruz, Arnold Gaje, Rex Ferdinand M. Traifalgar, Ryo Kakioka, Hirohiko Takeshima, Hiroyuki Motomura, Fumihito Muto, Ricardo P. Babaran, Satoshi Ishikawa
    • Journal Title

      Ichthyological Research

      Volume: 63 Issue: 2 Pages: 275-287

    • DOI

      10.1007/s10228-015-0498-z

    • NAID

      40020815940

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Solving the mixed-stock problem by an integrative approach: a case study of the genus Rastrelliger (Pisces: Perciformes: Scombridae).2016

    • Author(s)
      Muto N, Alama UB, Guzman AMT, Cruz SR, Gaje CA, Kakioka R, Takeshima H, Hata H, Motomura H, Muto F, Traifalgar RFM, Babaran RP, Ishikawa S.
    • Organizer
      The 25th Federation of Asian and Oceanian Biochemists and Molecular Biologists Conference
    • Place of Presentation
      Philippine International Convention Center
    • Year and Date
      2016-12-05
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 西太平洋から得られたベラ科ホホスジモチノウオ属の2未記載種2016

    • Author(s)
      福井美乃,武藤望生,本村浩之
    • Organizer
      2016年度日本魚類学会年会
    • Place of Presentation
      岐阜大学
    • Year and Date
      2016-09-23
    • Related Report
      2016 Annual Research Report
  • [Presentation] 西太平洋におけるオニアジの隠蔽種と交雑2016

    • Author(s)
      武藤望生,Arnold GAJE, Ramon CRUZ,Ulysses ALAMA,Armi GUZMAN,Rex TRAIFALGAR,Ricardo BABARAN,本村浩之,武藤文人,武島弘彦,石川智士
    • Organizer
      2016年度日本魚類学会年会
    • Place of Presentation
      岐阜大学
    • Year and Date
      2016-09-23
    • Related Report
      2016 Annual Research Report
  • [Presentation] Highly divergent lineages in the freshwater needlefish Xenentodon within the Mekong River System.2016

    • Author(s)
      Kakioka R, Muto N, Kounthongbang A, Ito S, Hort S, Takeshima H, Ishikawa S, Iguchi K.
    • Organizer
      Annual meeting of the Ichthyological Society of Taiwan and the Asian Society of Ichythyologists
    • Place of Presentation
      Nangang Exhibition Center, Taiwan
    • Year and Date
      2016-05-18
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Fish species diversity around Bidong Island off Terengganu, Peninsular Malaysia2016

    • Author(s)
      Koeda K, Ghaffar MA, Arshad A, Giat SY, Kadir STSA, Ramasamy AMA, Ibrahim YS, Nakae M, Muto N, Yoshiura A, Matsuo R, Kimura S, Motomura H.
    • Organizer
      Asian CORE-COMSEA Seminar on Coastal Ecosystems in Southeast Asia
    • Place of Presentation
      ATMOSPHERE AND OCEAN RESEARCH INSTITUTE, THE UNIVERSITY OF TOKYO
    • Year and Date
      2016-02-24
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Reef and shore fishes of Ha Long Bay, a World Heritage Site in northern Vietnam2016

    • Author(s)
      Kimura S, Quan NV, Motomura H, Nakae M, Imamura H, Muto N, The ND, Chien PV, Yoshida T, Hibino Y, Jeong B, Suzuki H, Tashiro S, Matsuura K.
    • Organizer
      Asian CORE-COMSEA Seminar on Coastal Ecosystems in Southeast Asia
    • Place of Presentation
      ATMOSPHERE AND OCEAN RESEARCH INSTITUTE, THE UNIVERSITY OF TOKYO
    • Year and Date
      2016-02-24
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Genetic and morphological differences among the three species of the genus Rastrelliger (Perciformes: Scombridae) and their identification using PCR-RFLP.2016

    • Author(s)
      Muto N, Alama UB, Guzman AMT, Cruz R, Gaje A, Kakioka R, Takeshima H, Hata H, Motomura H, Muto F, Traifalgar RFM, Babaran RP, Ishikawa S
    • Organizer
      International Conference on Fisheries and Aquatic Sciences.
    • Place of Presentation
      Amigo Terrace Hotel
    • Year and Date
      2016-01-26
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Coastal fish diversity in the South China Sea. International Workshop on Area-capability studies in Coastal Zone of Southeast Asia.2015

    • Author(s)
      Muto N, Kakioka R, Takeshima H, Alama UB, Hata H, Guzman AMT, Cruz R, Gaje A, Traifalgar RFM, Yangphonkhan B, Phuttarakusa K, Arnupapboon S, Vilasri V, Babaran RP, Motomura H, Muto F.
    • Organizer
      International Workshop on Area-capability studies in Coastal Zone of Southeast Asia.
    • Place of Presentation
      Research Institute for Humanity and Nature
    • Year and Date
      2015-12-10
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Spatiotemporal variations in δ13C and δ15N values of demersal fishes captured by small scale fisheries in Bandon Bay, Southern Thailand2015

    • Author(s)
      Yuki Okamoto, Nozomu Muto, Koetsu Kon, Kazuya Watanabe, Takashi Yoshikawa Jintana Salaenoi, Satoshi Ishikawa.
    • Organizer
      平成27年度日本水産学会秋季大会
    • Place of Presentation
      東京海洋大学
    • Year and Date
      2015-09-23
    • Related Report
      2015 Research-status Report
  • [Presentation] グルクマ属魚類3種の遺伝的・形態的差異2015

    • Author(s)
      武藤望生,Ulysses ALAMA,畑 晴陵,武島弘彦,柿岡 諒,Arnold GAJE, Ramon CRUZ,Armi GUZMAN,Rex TRAIFALGAR,Ricardo BABARAN,本村浩之,武藤文人,石川智士.
    • Organizer
      2015年度日本魚類学会年会
    • Place of Presentation
      近畿大学
    • Year and Date
      2015-09-09
    • Related Report
      2015 Research-status Report
  • [Presentation] 南シナ海におけるメガネタマガシラの遺伝的集団構造2015

    • Author(s)
      柿岡諒,武藤望生,武島弘彦,Osman MUDA,Sukchai ARNUPAPBOON,Kamolrat PHUTTHARAKSA,Nguyen VAN QUAN, Arnold GAJE,Ramon CRUZ,Ulysses ALAMA,Armi GUZMAN,Rex TRAIFALGAR,Ricardo BABARAN,本村浩之,武藤文人,石川智士.
    • Organizer
      2015年度日本魚類学会年会
    • Place of Presentation
      近畿大学
    • Year and Date
      2015-09-09
    • Related Report
      2015 Research-status Report
  • [Presentation] Genetic population structure of commercially important coastal fishes in the South China Sea2014

    • Author(s)
      Nozomu Muto
    • Organizer
      Mini-symposium on marine fish biodiversity in Southeast Asia
    • Place of Presentation
      Institute of Marine Environment and Resources, Vietnam Academy of Science and Technology
    • Year and Date
      2014-12-10
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 南シナ海におけるアジ科魚類3種の遺伝的集団構造2014

    • Author(s)
      武藤望生,柿岡 諒,Osman Bin MUDA,Sukchai ARNUPAPBOON,Kamolrat PHUTTHARAKSA,Arnold GAJE, Ramon CRUZ, Ulysses B. ALAMA, Rex Ferdinand M. TRAIFALGAR, Ricardo P. BABARAN,武島弘彦,本村浩之,武藤文人,石川智士
    • Organizer
      2014年度日本魚類学会年会
    • Place of Presentation
      神奈川県立 生命の星・地球博物館
    • Year and Date
      2014-11-14 – 2014-11-17
    • Related Report
      2014 Research-status Report
  • [Book] Commercial and Bycatch Market Fishes of Panay Island, Republic of the Philippines.2017

    • Author(s)
      Motomura H, Alama UB, Muto N, Babaran RP, Ishikawa S
    • Total Pages
      246
    • Publisher
      The Kagoshima University Museum, Kagoshima, University of the Philippines Visayas, Iloilo, and Research Institute for Humanity and Nature, Kyoto
    • Related Report
      2016 Annual Research Report
  • [Book] Coastal Area Capability Enhancement in Southeast Asia Project Interim Report2015

    • Author(s)
      Coastal Area Capability Enhancement in Southeast Asia” Project (ed)
    • Total Pages
      554
    • Publisher
      Coastal Area Capability Enhancement in Southeast Asia” Project
    • Related Report
      2015 Research-status Report

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Published: 2014-04-04   Modified: 2022-02-16  

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