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Understanding roles of epigenetics in reproductive strategies of clonal plants

Research Project

Project/Area Number 26840148
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Ecology/Environment
Research InstitutionRitsumeikan University

Principal Investigator

Araki Kiwako  立命館大学, 生命科学部, 任期制講師 (30580930)

Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywordsクローナル植物 / エピジェネティック変異 / 野生植物 / DNAメチル化 / 生育環境 / 環境応答 / クローン繁殖
Outline of Final Research Achievements

To reveal epigenetic roles in plants reproduced by clonal reproduction without genetic changes, clonal individuals of three clonal species were cultivated in different conditions to investigate their phenotypic and DNA methylation changes. As a result, such phenotypes as flowering number, leaf number and leaf shapes varied between clonal ramets of different treatments, which was however not inherited. In the result of bisulfite sequencing, methylation differences between ramets with different treatments were 2% on average (maximum 40%), which indicated that few changes of DNA methylation status might be caused between clonal individuals during the generation. Therefore, it is suggested that clonal offspring respond to the environment they experience, but DNA methylations of them are stable for the experimental periods.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (32 results)

All 2017 2016 2015 2014 Other

All Journal Article (15 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 15 results,  Open Access: 11 results,  Acknowledgement Compliant: 1 results) Presentation (14 results) (of which Invited: 3 results) Book (1 results) Remarks (2 results)

  • [Journal Article] Genet-specific DNA methylation probabilities detected in a spatial epigenetic analysis of a clonal plant population2017

    • Author(s)
      Araki KS, Kubo T, Kudoh H
    • Journal Title

      PloS ONE

      Volume: 12 Issue: 5 Pages: e0178145-e0178145

    • DOI

      10.1371/journal.pone.0178145

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Clonality: effectiveness of clonal multiplication for disperse and response to fine scale environmental change2017

    • Author(s)
      Araki KS, Fukui S
    • Journal Title

      JAPANESE JOURNAL OF ECOLOGY

      Volume: 67 Issue: 2 Pages: 119-122

    • DOI

      10.18960/seitai.67.2_119

    • NAID

      130005893354

    • ISSN
      0021-5007, 2424-127X
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Reproductive ways (clonal vs seed) and spatial genetic structure in clonal plants2017

    • Author(s)
      Fukui S, Araki KS
    • Journal Title

      JAPANESE JOURNAL OF ECOLOGY

      Volume: 67 Issue: 2 Pages: 147-159

    • DOI

      10.18960/seitai.67.2_147

    • NAID

      130005893344

    • ISSN
      0021-5007, 2424-127X
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Features of clonal proliferation and adaptive evolution in neoplastic cells2017

    • Author(s)
      Araki KS, Fukui S, Sugihara H
    • Journal Title

      JAPANESE JOURNAL OF ECOLOGY

      Volume: 67 Issue: 2 Pages: 169-180

    • DOI

      10.18960/seitai.67.2_169

    • NAID

      130005893348

    • ISSN
      0021-5007, 2424-127X
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Spatial genetic structure and body size divergence in endangered Gymnogobius isaza in ancient Lake Biwa2017

    • Author(s)
      Nakazawa T, Liu SYV, Sakai Y, Araki KS, Tsai CH, Okuda N
    • Journal Title

      Mitochondrial DNA Part A

      Volume: 9 Issue: 5 Pages: 1-9

    • DOI

      10.1080/24701394.2017.1357708

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] ガン細胞に見るクローン増殖と適応進化-細胞の特殊性とクローン生物との共通性を考える-2017

    • Author(s)
      荒木希和子・福井眞・杉原洋行
    • Journal Title

      日本生態学会誌

      Volume: 印刷中

    • NAID

      130005893348

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] クローン植物の繁殖戦略と遺伝構造-固着性生活をおくる上での空間不均一性への適応-2017

    • Author(s)
      福井眞・荒木希和子
    • Journal Title

      日本生態学会誌

      Volume: 印刷中

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Stimulation of soil microorganisms in pesticide-contaminated soil using organic materials2016

    • Author(s)
      Adhikari D, Perwira YI, Araki KS, Kubo M
    • Journal Title

      AIMS Bioengineering

      Volume: 3 Issue: 3 Pages: 379-388

    • DOI

      10.3934/bioeng.2016.3.379

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analysis of chemical and biological soil properties in organically and conventionally fertilized apple orchards2016

    • Author(s)
      Kai T, Mukai M, Araki KS, Adhikari D, Kubo M
    • Journal Title

      Journal of Agricultural Chemistry and Environment

      Volume: 5 Issue: 02 Pages: 92-99

    • DOI

      10.4236/jacen.2016.52010

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comparison of soil properties between upland and paddy fields based on the soil fertility index (SOFIX)2016

    • Author(s)
      Araki KS, Perwira IY, Adhikari D, Kubo M
    • Journal Title

      Current Trends in Microbiology

      Volume: 10 Pages: 85-94

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Degradation of bioplastics in soil and their degradation effects on environmental microorganisms2016

    • Author(s)
      D Adhikari, M. Mukai, KS Araki, T Kai, K Kubota, T Kawagoe, M Kubo
    • Journal Title

      Journal of Agricultural Chemistry and Environment

      Volume: 5 Pages: 23-34

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Analysis of chemical and biological soil properties in organically and conventionally fertilized apple orchards2016

    • Author(s)
      T Kai, M Mukai, KS Araki, D Adhikari, M Kubo
    • Journal Title

      Agricultural Chemistry and Environment

      Volume: 5

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Physical and biological properties of apple orchard soils of different productivities2015

    • Author(s)
      T Kai, M Mukai, KS Araki, D Adhikari, M Kubo
    • Journal Title

      Open Journal of Soil Science

      Volume: 5 Pages: 149-156

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A new proposal for a soil fertility index (SOFIX) for organic agriculture and development of a SOFIX database for agricultural fields.2015

    • Author(s)
      D. Adhikari, T. Kai, M. Mukai, K.S. Araki, M. Kubo.
    • Journal Title

      Current topics in biotechnology

      Volume: 印刷中

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Spatial Niche Facilitates Clonal Reproduction in Seed Plants under Temporal Disturbance.2014

    • Author(s)
      S. Fukui, K. S. Araki
    • Journal Title

      PLoS ONE

      Volume: 9 Issue: 12 Pages: e116111-e116111

    • DOI

      10.1371/journal.pone.0116111

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 林床植物におけるクローン繁殖様式の個体差と集団構造2017

    • Author(s)
      辻本典顯・荒木希和子・工藤洋
    • Organizer
      第64回日本生態学会
    • Place of Presentation
      早稲田大学早稲田キャンパス(東京都新宿区)
    • Year and Date
      2017-03-14
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 地下茎伸長のダイナミクス-クローン成長の推移行列モデル構築-2016

    • Author(s)
      荒木希和子・島谷健一郎・大原雅
    • Organizer
      第48回種生物学シンポジウム
    • Place of Presentation
      キロロトリビュートポートフォリオホテル(北海道余市郡赤井川村)
    • Year and Date
      2016-12-03
    • Related Report
      2016 Research-status Report
  • [Presentation] 草本バイオマスを利用したグルコース生産2016

    • Author(s)
      荒木希和子・久保幹
    • Organizer
      第68回日本生物工学会大会
    • Place of Presentation
      富山国際会議場(富山県富山市)
    • Year and Date
      2016-09-28
    • Related Report
      2016 Research-status Report
  • [Presentation] Analysis of soil environment and microorganisms in agricultural fields農地の土壌環境と微生物叢の解析2016

    • Author(s)
      荒木希和子・Adhikari Dinesh・向真樹・久保幹
    • Organizer
      日本農芸化学会2016年度札幌大会
    • Place of Presentation
      札幌コンベンションセンター(北海道札幌市)
    • Year and Date
      2016-03-30
    • Related Report
      2015 Research-status Report
  • [Presentation] クローン成長の推移行列モデル-地下茎伸長のダイナミクス-2016

    • Author(s)
      荒木希和子・島谷健一郎・大原雅
    • Organizer
      第63回日本生態学会
    • Place of Presentation
      仙台国際センター(宮城県仙台市)
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] ゲノムワイドSNPによる地域的な遺伝構造と局所適応パターンの解明:コンロンソウを例に2016

    • Author(s)
      岩崎貴也・荒木希和子・永野惇・Renat Sabirov・Karol Marhold・Valentin Yakubov・Jae-Hong Pak・伊藤元己・工藤洋
    • Organizer
      日本植物分類学会第15回大会
    • Place of Presentation
      富山大学(富山県富山市)
    • Year and Date
      2016-03-08
    • Related Report
      2015 Research-status Report
  • [Presentation] 疑似一年生クローン植物集団におけるジェネットの分布に依存したラメットサイズの変異2015

    • Author(s)
      辻本典顯・荒木希和子・工藤洋
    • Organizer
      第46回種生物学シンポジウム
    • Place of Presentation
      かんぽの宿岐阜羽島(岐阜県羽島市)
    • Year and Date
      2015-12-04
    • Related Report
      2015 Research-status Report
  • [Presentation] 空間自己相関をもつ撹乱条件下でのクローン繁殖戦略 -2015

    • Author(s)
      福井眞・荒木希和子
    • Organizer
      第 31 回個体群生態学会大会
    • Place of Presentation
      滋賀県立大学(滋賀県彦根市)
    • Year and Date
      2015-10-11
    • Related Report
      2015 Research-status Report
  • [Presentation] 野生植物集団におけるエピジェネティック・ジェネティック変異の役割2015

    • Author(s)
      荒木希和子,工藤洋
    • Organizer
      第9回日本エピジェネティクス研究会
    • Place of Presentation
      一橋大学(東京都)
    • Year and Date
      2015-05-25 – 2015-05-26
    • Related Report
      2014 Research-status Report
  • [Presentation] クローン植物の優占ジェネットにおけるラメット生産様式:自然集団と移植実験による解析2015

    • Author(s)
      辻本典顯,荒木希和子,八杉公基,本庄三恵,永野惇,工藤洋
    • Organizer
      第62回日本生態学会
    • Place of Presentation
      鹿児島大学(鹿児島県)
    • Year and Date
      2015-03-21
    • Related Report
      2014 Research-status Report
  • [Presentation] 網羅的サンプリングとRAD-seq 法を活用した分子系統地理-東アジアに広域分布するコンロンソウを例に2015

    • Author(s)
      岩崎貴也,荒木希和子,永野惇,Sabirov,R.N.,Marhold, K.,Yakubov, V.V.,Pak, J.-H.,伊藤元己,工藤洋
    • Organizer
      第62回日本生態学会
    • Place of Presentation
      鹿児島大学(鹿児島県)
    • Year and Date
      2015-03-21
    • Related Report
      2014 Research-status Report
  • [Presentation] クローン成長の推移行列2014

    • Author(s)
      荒木希和子,島谷健一郎,大原雅
    • Organizer
      行列モデル研究集会
    • Place of Presentation
      統計数理研究所(東京都)
    • Year and Date
      2014-09-24
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 耕作地における窒素固定細菌の多様性の解析2014

    • Author(s)
      荒木希和子,Chalee Kongwichian,竹里駿希,Dinesh Adhikari,向真樹,久保幹
    • Organizer
      第66回日本生物工学会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2014-09-11
    • Related Report
      2014 Research-status Report
  • [Presentation] 地下茎で広がるクローナル植物の 空間パターン―スズランのクローン成長とその伸長方向―2014

    • Author(s)
      荒木希和子,島谷健一郎,大原雅
    • Organizer
      思考力教育養成ワークショップ
    • Place of Presentation
      統計数理研究所(東京都)
    • Year and Date
      2014-08-26
    • Related Report
      2014 Research-status Report
    • Invited
  • [Book] エピジェネティクスの生態学―環境に応答して遺伝子を調節するしくみ2017

    • Author(s)
      荒木希和子・伊藤秀臣・小林一三・佐竹暁子・鈴木俊介・玉田洋介・田中健太・西尾治幾・西村泰介・星野敦
    • Total Pages
      245
    • Publisher
      文一総合出版
    • Related Report
      2016 Research-status Report
  • [Remarks] Kiwako S. Araki's site

    • URL

      https://sites.google.com/site/kiwako89/home

    • Related Report
      2014 Research-status Report
  • [Remarks] 立命館大学生命科学部生物工学科教員 荒木希和子

    • URL

      http://research-db.ritsumei.ac.jp/Profiles/112/0011168/profile.html

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2019-03-29  

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