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Improvement of the quantification accuracy of environmental nucleic acids for the estimation of the biomass and the metabolic rate of aquatic organisms

Research Project

Project/Area Number 26840152
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Ecology/Environment
Research InstitutionRyukoku University

Principal Investigator

Yamanaka Hiroki  龍谷大学, 理工学部, 講師 (60455227)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords生物量 / 代謝量 / 環境核酸 / 環境評価 / 測定精度 / 遺伝子 / 水棲生物
Outline of Final Research Achievements

In this study, we tried to improve the accuracy of the quantification of environmental nucleic acids (environmental DNA and environmental RNA) to expand the application of eDNA and eRNA analyses for the estimation of biomass and metabolic rate of aquatic organisms. Environmental DNA has known to degrade rapidly in water, and it causes problem in the quantification of eDNA. We developed a new on site filtration system. Immediate filtration followed by freezing of the obtained filter sample provided eDNA samples which precisely reflected the real concentration of eDNA at the sampling time. On the other hand, the quantification accuracy of eRNA did not improved well due to an unexpected large variation of measurement values. However, we succeeded in the species-specific detection of mRNA relating to the metabolism of common carp from field water sample, and found that eRNA might remain in water at quantifiable concentration for at least 24 hours by a tank experiment.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (7 results)

All 2016 2015 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (4 results) (of which Int'l Joint Research: 1 results) Remarks (1 results)

  • [Journal Article] The use of environmental DNA of fishes as an efficient method of determining habitat connectivity2016

    • Author(s)
      Yamanaka, H. and Minamoto, T.
    • Journal Title

      Ecological Indicators

      Volume: 62 Pages: 147-153

    • DOI

      10.1016/j.ecolind.2015.11.022

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effects of water pH and proteinase K treatment on the yield of environmental DNA from water samples2016

    • Author(s)
      Tsuji, S., Yamanaka, H., Minamoto, T.
    • Journal Title

      Limnology

      Volume: 印刷中 Issue: 1 Pages: 1-7

    • DOI

      10.1007/s10201-016-0483-x

    • NAID

      40021062363

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Presentation] 魚類からの環境RNA放出速度と温度依存性2016

    • Author(s)
      垣見直希, 河野吉将, 山中裕樹
    • Organizer
      第63回日本生態学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2016-03-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] 種特異的プライマーセットとリアルタイムPCRによる魚類の分布推定2016

    • Author(s)
      山中裕樹,櫻井翔,本澤大生,本郷真理,辻冴月
    • Organizer
      第63回日本生態学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2016-03-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] 環境DNA分析におけるリアルタイムPCRとデジタルPCRの検出率の比較2016

    • Author(s)
      十河勇樹,土居秀幸,山中裕樹
    • Organizer
      第63回日本生態学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2016-03-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] On site filtration of water samples for environmental DNA analysis to avoid DNA degradation during transportation.2015

    • Author(s)
      Hiroki Yamanaka, Hiromu Motozawa, Satsuki Tsuji, Ryohei C Miyazawa
    • Organizer
      British Ecological Society 2015 Annual Meeting
    • Place of Presentation
      Edinburgh, Scotland
    • Year and Date
      2015-12-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Remarks] Yamanaka's Web Site

    • URL

      http://www.est.ryukoku.ac.jp/est/yamanaka/index.html

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2017-05-10  

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