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Analyses of secondary metabolism gene promoters activated by combined-culture

Research Project

Project/Area Number 26850044
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Applied microbiology
Research InstitutionThe University of Tokyo

Principal Investigator

ASAMIZU Shumpei  東京大学, 農学生命科学研究科, 助教 (90709057)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords放線菌 / ミコール酸含有細菌 / 二次代謝 / 共培養 / 微生物間相互作用 / 遺伝子プロモーター / 遺伝子発現 / 複合培養 / 二次代謝活性化 / 抗生物質生産 / 細菌間相互作用 / 生合成
Outline of Final Research Achievements

Secondary metabolites (SMs) produced by actinomycetes are great resources for therapeutic application. Actinomycetes are suggested to possess more than 20 of cryptic gene clusters for SMs production. Our study focus on co-culture method between actinomycetes and mycolic acid-containing bacteria (MACB), that had been shown to activate the cryptic gene clusters of actinomycetes. We used biosynthetic gene cluster of a ribosomal synthesized peptide antibiotic as a model to elucidate the mechanism of activation by stimulation of MACB.
Within this specific research project, godA promoter (PgodA) was identified using genetic analyses and colorimetric reporter assay. The sequence of PgodA showed consensus of HrdB. Transcriptomic analyses of co-culture between Streptomyces coelicolor and MACB showed global variations of gene expression by S. coelicolor, suggesting a possibility that overproduction of SMs are as the result of flux balance variations of whole cell metabolism.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (17 results)

All 2016 2015 2014 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Acknowledgement Compliant: 4 results,  Open Access: 1 results) Presentation (11 results) (of which Int'l Joint Research: 1 results,  Invited: 2 results) Remarks (1 results)

  • [Journal Article] Insights into the Biosynthesis of Dehydroalanines in Goadsporin2016

    • Author(s)
      Taro Ozaki, Yukari Kurokawa, Shohei Hayashi, Naoya Oku, Shumpei Asamizu, Yasuhiro Igarashi, Hiroyasu Onaka
    • Journal Title

      Chembiochem

      Volume: 17 Issue: 3 Pages: 218-223

    • DOI

      10.1002/cbic.201500541

    • NAID

      120006313535

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Mycolic acid-containing bacteria activate heterologous secondary metabolite expression in Streptomyces lividans.2015

    • Author(s)
      Onaka H, Ozaki T, Mori Y, Izawa M, Hayashi S, Asamizu S.
    • Journal Title

      J Antibiot (Tokyo)

      Volume: 印刷中 Issue: 9 Pages: 594-597

    • DOI

      10.1038/ja.2015.31

    • NAID

      120005844159

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Killing of Mycolic Acid-Containing Bacteria Aborted Induction of Antibiotic Production by Streptomyces in Combined-Culture.2015

    • Author(s)
      Asamizu S, Ozaki T, Teramoto K, Satoh K, Onaka H.
    • Journal Title

      PLoS One

      Volume: 10 Issue: 11 Pages: e0142372-e0142372

    • DOI

      10.1371/journal.pone.0142372

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 5-Alkyl-1,2,3,4-tetrahydroquinolines, New Membrane-Interacting Lipophilic Metabolites Produced by Combined Culture of Streptomyces nigrescens and Tsukamurella pulmonis.2015

    • Author(s)
      Sugiyama R, Nishimura S, Ozaki T, Asamizu S, Onaka H, Kakeya H.
    • Journal Title

      Org Lett.

      Volume: 印刷中 Issue: 8 Pages: 1918-1921

    • DOI

      10.1021/acs.orglett.5b00607

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Genetic approaches to generate hyper-producing strains of goadsporin: the relationships between productivity and gene duplication in secondary metabolite biosynthesis.2014

    • Author(s)
      Haginaka K, Asamizu S, Ozaki T, Igarashi Y, Furumai T, Onaka H.
    • Journal Title

      Biosci Biotechnol Biochem.

      Volume: 78 Issue: 3 Pages: 394-399

    • DOI

      10.1080/09168451.2014.885824

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] RNA-seqによるミコール酸含有細菌に対するStreptomyces coelicolor A3(2)の応答解析2016

    • Author(s)
      佐々木槇子、浅水俊平、尾﨑太郎、宮本憲二、尾仲宏康
    • Organizer
      日本農芸化学会2016年度札幌大会
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2016-03-28
    • Related Report
      2015 Annual Research Report
  • [Presentation] 複合培養特異的に生産されるテトラヒトロキノリン生合成遺伝子の解析2016

    • Author(s)
      下村杜人、尾崎太郎、杉山龍介、西村慎一、浅水俊平、掛谷秀昭、 尾仲宏康
    • Organizer
      日本農芸化学会2016年度札幌大会
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2016-03-28
    • Related Report
      2015 Annual Research Report
  • [Presentation] Adhesion of alive mycolic acid-containing bacteria is an important factor to induce secondary metabolisms in Streptomyces2015

    • Author(s)
      Shumpei Asamizu, Taro Ozaki, Kanae Teramoto, Katsuya Satoh, Hiroyasu Onaka
    • Organizer
      Pacifichem 2015
    • Place of Presentation
      米国ハワイ州
    • Year and Date
      2015-12-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 放線菌-ミコール酸含有細菌間相互作用を介して生産される放線菌の特異的二次代謝2015

    • Author(s)
      浅水俊平
    • Organizer
      第5回細菌細胞の増殖と代謝研究会
    • Place of Presentation
      静岡県三島市
    • Year and Date
      2015-11-06
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 複合培養における放線菌とミコール酸含有菌の生死で異なる相互作用2015

    • Author(s)
      浅水俊平、尾崎太郎、寺本華奈江、佐藤勝也、尾仲宏康
    • Organizer
      第30回日本放線菌学会
    • Place of Presentation
      富山県富山市
    • Year and Date
      2015-09-07
    • Related Report
      2015 Annual Research Report
  • [Presentation] 複合培養における放線菌二次代謝の誘導要因の探索2015

    • Author(s)
      浅水俊平、尾崎太郎、佐藤勝也、尾仲宏康
    • Organizer
      日本農芸化学会2015年度岡山大会
    • Place of Presentation
      岡山県岡山市
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Research-status Report
  • [Presentation] 異属細菌が誘導する放線菌の天然化合物生産2015

    • Author(s)
      浅水俊平
    • Organizer
      第3回置賜マイクロ・ナノバイオフォーラム
    • Place of Presentation
      山形県米沢市
    • Year and Date
      2015-02-05
    • Related Report
      2014 Research-status Report
  • [Presentation] Secondary metabolite induction by mycolic acid-containing bacteria in Streptomyces2015

    • Author(s)
      Shumpei Asamizu, Taro Ozaki, Hiroyasu Onaka
    • Organizer
      Natural Product Discovery & Development in the Post Genomic Era
    • Place of Presentation
      San Diego, CA, USA
    • Year and Date
      2015-01-11 – 2015-01-14
    • Related Report
      2014 Research-status Report
  • [Presentation] 異属細菌による放線菌二次代謝の誘導2014

    • Author(s)
      浅水俊平、尾崎太郎、尾仲宏康
    • Organizer
      第10回生合成勉強会
    • Place of Presentation
      東京都文京区
    • Year and Date
      2014-08-02
    • Related Report
      2014 Research-status Report
  • [Presentation] 死細胞は放線菌の二次代謝を複合培養において誘導しない2014

    • Author(s)
      浅水俊平、尾崎太郎、尾仲宏康
    • Organizer
      日本放線菌学会つくば大会
    • Place of Presentation
      茨城県つくば市
    • Year and Date
      2014-06-19 – 2014-06-20
    • Related Report
      2014 Research-status Report
  • [Presentation] 異属細菌による放線菌二次代謝産物の誘導2014

    • Author(s)
      浅水俊平
    • Organizer
      2014年度第1回公益社団法人日本農芸化学会関東支部例会
    • Place of Presentation
      東京都文京区
    • Year and Date
      2014-05-24
    • Related Report
      2014 Research-status Report
    • Invited
  • [Remarks] 微生物潜在機能探索寄付講座ホームページ

    • URL

      http://microbial-potential.bt.a.u-tokyo.ac.jp/

    • Related Report
      2015 Annual Research Report 2014 Research-status Report

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Published: 2014-04-04   Modified: 2017-05-10  

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