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Direct detection of polioviruses from environmental samples

Research Project

Project/Area Number 26860450
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Hygiene and public health
Research InstitutionNational Institute of Infectious Diseases

Principal Investigator

Nakamura Tomofumi  国立感染症研究所, その他部局等, 研究員 (90446881)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsポリオウイルス / 環境サーベイランス / レセプター結合型ビーズ / 次世代シークエンス / ポリオ / 直接検出 / サーベイランス
Outline of Final Research Achievements

BY using negatively-charged filter and magnetic nanobeads with PV receptor (PVR-MB), we could concentrate spiked PV to 5,000-fold conc. Besides this, entire capsid coding region amprification (ECRA) method and NGS analysis were highest sensitive at PV detection than any other methods. From the analysis of PV-positive Pakistani environmental samples, we could identify many kinds of PVs, including vaccine and wild strains, and other non-PV enteroviruses. It was stongly suggested that this combination method was high sensitive and time-saving PV detection tool with informative virus sequences. And this method is effective environmental PV surveillance technique without bias often found in cell culture based PV isolation.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (5 results)

All 2015 2014

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (2 results)

  • [Journal Article] Environmental surveillance of poliovirus in sewage water around the introduction period for inactivated polio vaccine in Japan2015

    • Author(s)
      Nakamura T, Hamasaki M, Yoshitomi H, Ishibashi T, Yoshiyama C, Maeda E, Sera N, Yoshida H.
    • Journal Title

      Appl Environ Microbiol.

      Volume: 81 Issue: 5 Pages: 1859

    • DOI

      10.1128/aem.03575-14

    • URL

      https://pure.teikyo.jp/en/publications/b12fba8e-084f-4b64-a070-573a3566dabc

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Construction and characterization of an infectious cDNA clone of rat hepatitis E virus.2015

    • Author(s)
      Li T.C., Yang T., Yoshizaki S., Ami Y., Suzaki Y., Ishii K., Haga K., Nakamura T., Ochiai S., Wakita T. and Johne R.
    • Journal Title

      Journal of General Virology

      Volume: 96 Issue: 6 Pages: 1320-1327

    • DOI

      10.1099/vir.0.000072

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Development of an efficient entire-capsid-coding-region amplification method for direct detection of poliovirus from stool extracts2015

    • Author(s)
      Arita M, Kilpatrick DR, Nakamura T, Burns CC, Bukbuk D, Oderinde SB, Oberste MS, Kew OM, Pallansch MA, Shimizu H
    • Journal Title

      J Clin Microbiol

      Volume: 53 Issue: 1 Pages: 73-78

    • DOI

      10.1128/jcm.02384-14

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Development of direct detection method of polioviruses from environmental samples2015

    • Author(s)
      Tomofumi Nakamura, Minetaro Arita, Hiroyuki Shimizu
    • Organizer
      第63回日本ウイルス学会学術集会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2015-11-22
    • Related Report
      2015 Annual Research Report
  • [Presentation] ウイルス受容体特異性を応用した環境水からのポリオウイルス直接検出法の開発2014

    • Author(s)
      中村 朋史、有田 峰太郎、清水 博之
    • Organizer
      第62回日本ウイルス学会学術集会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-10 – 2014-11-12
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2017-05-10  

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