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Analysis of skin microbiome using NGS technology and development of novel treatment

Research Project

Project/Area Number 26860902
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Dermatology
Research InstitutionOkayama University (2015-2016)
Kinki University (2014)

Principal Investigator

Shuta Tomida  岡山大学, 医歯薬学総合研究科, 准教授 (10372111)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords細菌叢 / NGS / 皮膚 / ニキビ / 比較ゲノム / 次世代シーケンサー / メタゲノム解析 / 比較ゲノム解析 / パンゲノム解析 / マイクロバイオーム / 次世代シークエンサー / アクネ菌 / プロバイオティクス / 共生細菌叢
Outline of Final Research Achievements

We have developed a series of protocol to analyze skin microbiome with highly reproducible manner using NGS, providing the basic idea of skin microbiome taken from Japanese people. In addition, based on the highly accurate draft genomes of the bacteriophages of Propionibacterium acnes, we succeeded in extraction of unique genome sequences that could affect the sensitivity to the phage infection. These results could shed light on the development of novel treatment against drug resistant P. acnes

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (5 results)

All 2017 2016 2015

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 2 results) Presentation (1 results) (of which Invited: 1 results)

  • [Journal Article] Comparative genome analyses of Mycobacterium avium reveal genomic features of its subspecies and strains that cause progression of pulmonary disease.2017

    • Author(s)
      Uchiya KI, Tomida S, Nakagawa T, Asahi S, Nikai T, Ogawa K.
    • Journal Title

      Sci Rep.

      Volume: 7 Issue: 1 Pages: 39750-39750

    • DOI

      10.1038/srep39750

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Draft Genome Sequence of Probiotic Lactobacillus acidophilus Strain L-55 Isolated from a Healthy Human Gut.2016

    • Author(s)
      Fujii Y, Toh H, Matsubara T, Tomida S, Nguyen CT, Mimura I, Nakamura S, Morita H.
    • Journal Title

      Genome Announc.

      Volume: 4 Issue: 6

    • DOI

      10.1128/genomea.01357-16

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epidermolysis bullosa simplex with mottled pigmentation with noncicatricial alopecia: identification of a recurrent p.P25L mutation in KRT5 in four affected family members.2016

    • Author(s)
      Nagai H, Oiso N, Tomida S, Sakai K, Fujiwara S, Nakamachi Y, Kawano S, Kawada A, Nishio K, Nishigori C.
    • Journal Title

      Br J Dermatol.

      Volume: 174 Issue: 3 Pages: 633-635

    • DOI

      10.1111/bjd.14083

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] The diversity and host interactions of Propionibacterium acnes bacteriophages on human skin2015

    • Author(s)
      Jared Liu, Riceley Yan, Qiao Zhong, Sam Ngo, Nathanael J Bangayan, Lin Nguyen, Timothy Lui, Minghsun Liu, Marie C Erfe, Noah Craft, Shuta Tomida and Huiying Li
    • Journal Title

      ISME J (advance online publication)

      Volume: 9 Issue: 9 Pages: 2078-2093

    • DOI

      10.1038/ismej.2015.47

    • Related Report
      2015 Research-status Report 2014 Research-status Report
    • Peer Reviewed
  • [Presentation] 皮膚マイクロバイオーム解析2016

    • Author(s)
      冨田秀太
    • Organizer
      日本皮膚科学会総会
    • Place of Presentation
      京都
    • Year and Date
      2016-06-04
    • Related Report
      2016 Annual Research Report 2015 Research-status Report
    • Invited

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Published: 2014-04-04   Modified: 2020-01-20  

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