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Development of innovative methods for regulating protein concentration using the ubiquitin-proteasome system

Research Project

Project/Area Number 26870216
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biophysics
Functional biochemistry
Research InstitutionUniversity of Toyama

Principal Investigator

INOBE Tomonao  富山大学, 先端ライフサイエンス拠点, 特命助教 (50568855)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2015: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords細胞内タンパク質分解 / プロテアソーム / Unstructured領域 / タンパク質分解 / 蛋白質分解 / ユビキチン
Outline of Final Research Achievements

Effective proteolysis of a folded protein by the proteasome requires the presence of an unstructured region in the substrate in addition to a polyubiquitin chain. Here, we propose two methods of regulating substrate-specific proteasome-mediated protein degradation by regulating the unstructured region of the protein. First, we show that degradation rates can be regulated by modulating the unstructured initiation region by the binding of modifier molecules, in vitro and in vivo. These results suggest that artificial modulation of proteasome initiation is a versatile method for conditionally inhibiting the proteasomal degradation of specific proteins. Second, we develope adapter proteins that deliver specific proteins containing effective unstructured initiation sites to the proteasome. Using this method, we succeed in inducing degradation of the mutant huntingtin protein, which contains an abnormally expanded polyglutamine tract.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (16 results)

All 2016 2015 2014 Other

All Int'l Joint Research (1 results) Journal Article (9 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 9 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (5 results) (of which Invited: 2 results) Remarks (1 results)

  • [Int'l Joint Research] テキサス大学オースチン校(米国)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Rapamycin-induced oligomer formation system of FRB-FKBP fusion proteins2016

    • Author(s)
      Inobe, T. and Nukina, N.
    • Journal Title

      J. Biosci. Bioeng.

      Volume: 121 Issue: 1 Pages: 40-46

    • DOI

      10.1016/j.jbiosc.2015.12.004

    • NAID

      40020885821

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Proteasomal degradation of damaged polyubiquitin2016

    • Author(s)
      Inobe, T. and Nozaki, M.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 471 Issue: 1 Pages: 34-40

    • DOI

      10.1016/j.bbrc.2016.02.006

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Novel method for the high-throughput production of phosphorylation site-specific monoclonal antibodies2016

    • Author(s)
      Nobuyuki Kurosawa, Yuka Wakata, Tomonao Inobe, Haruki Kitamura, Megumi Yoshioka, Shun Matsuzawa, Yoshihiro Kishi & Masaharu Isobe
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 25174-25174

    • DOI

      10.1038/srep25174

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The sequence composition of disordered regions affects protein half-life by controlling the initiation step of proteasomal degradation.2015

    • Author(s)
      Fishbain, S., Inobe, T., Israeli, E., Chavali, S., Yu, H., Zokarkar, A., Babu, MM., and Matouschek, A.
    • Journal Title

      Nature Struct. Mol. Biol.

      Volume: 22 Issue: 3 Pages: 214-221

    • DOI

      10.1038/nsmb.2958

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] N-terminal coiled-coil structure of ATPase subunits of 26S proteasome is crucial for proteasome function2015

    • Author(s)
      Inobe, T. and Genmei, R.
    • Journal Title

      PLoS ONE

      Volume: 10 Issue: 7 Pages: e0134056-e0134056

    • DOI

      10.1371/journal.pone.0134056

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regulation of proteasomal degradation modulating an unstructured proteasomal initiation region of a substrate2015

    • Author(s)
      Takahashi, K., Matouschek, A. and Inobe, T.
    • Journal Title

      ACS Chem. Biol.

      Volume: 10 Issue: 11 Pages: 2537-2543

    • DOI

      10.1021/acschembio.5b00554

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Artificial regulation of p53 function by modulating its assembly2015

    • Author(s)
      Inobe, T., Nozaki, M. and Nukina, N.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 467 Issue: 2 Pages: 322-327

    • DOI

      10.1016/j.bbrc.2015.09.162

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Inhibition of the 26S proteasome by peptide mimics of the coiled-coil region of its ATPase subunits2015

    • Author(s)
      Inobe, T. and Genmei, R.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 468 Issue: 1-2 Pages: 143-150

    • DOI

      10.1016/j.bbrc.2015.10.144

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Paradigms of protein degradation by the proteasome2014

    • Author(s)
      Inobe, T. and Matouschek A.
    • Journal Title

      Curr. Opin. Struct. Biol.

      Volume: 24 Pages: 156-164

    • DOI

      10.1016/j.sbi.2014.02.002

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] プロテアソームによる新生鎖の分解制御2016

    • Author(s)
      伊野部智由
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場、福岡
    • Year and Date
      2016-06-07
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Regulation of the protein degradation by the proteasome. The 4th International Symposium of Life Sciences2014

    • Author(s)
      Inobe, T.
    • Organizer
      The 4th International Symposium of Life Sciences
    • Place of Presentation
      富山大学
    • Year and Date
      2014-12-11
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 不規則領域をターゲットとしたプロテアソームによる蛋白質分解の制御2014

    • Author(s)
      高橋一暢、伊野部智由
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Research-status Report
  • [Presentation] プロテアソームATPaseリングN末端突起の蛋白質分解における役割2014

    • Author(s)
      伊野部智由
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Research-status Report
  • [Presentation] Inhibition of proteasome-mediated degradation through an unstructured initiation site of a targeted protein2014

    • Author(s)
      Takahashi, K., and Inobe, T.
    • Organizer
      FASEB Science Research Conference "Ubiquitin and Cellular Regulation"
    • Place of Presentation
      Saxtons River
    • Year and Date
      2014-06-15 – 2014-06-20
    • Related Report
      2014 Research-status Report
  • [Remarks] 富山大学 工学部 生命工学科 タンパク質システム工学研究室

    • URL

      http://inobelab.wordpress.com

    • Related Report
      2015 Annual Research Report

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Published: 2014-04-04   Modified: 2022-01-27  

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