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Artificially Controlled Replication Machinery for Bacterial Genome Design

Research Project

Project/Area Number 26870575
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field System genome science
Genome biology
Research InstitutionKeio University (2015)
Osaka University (2014)

Principal Investigator

KONO Nobuaki  慶應義塾大学, 政策・メディア研究科, 特任助教 (90647356)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2014: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords合成生物学 / バイオインフォマティクス / ゲノム複製 / ゲノム構造 / 枯草菌 / 発現変動 / ゲノムデザイン / 対称性 / 逆位
Outline of Final Research Achievements

In this project, about a bacteria harboring circular chromosome, we set a goal to recognize the relationship between the genomic structure and replication efficiency, and design a bacterial genome by using various approaches in bioinformatics and genetics. As the results, first, we succeeded in constructing various mutants whose genomic structures were disrupted by inversion and dissection mutations in Bacillus subtilis, and developed a protocol for replication profiling method to observe the behavior of replication forks in cell. Using the mutants and methods, we cleared that the treatment of some gene factor enables to control the replication machinery.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (9 results)

All 2015 2014 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (7 results) (of which Invited: 3 results) Remarks (1 results)

  • [Journal Article] Undesigned Selection for Replication Termination of Bacterial Chromosomes2014

    • Author(s)
      Kono N, Arakawa K, Sato M, Yoshikawa H, Tomita M, Itaya M.
    • Journal Title

      Journal of Molecular Biology

      Volume: 426 Issue: 16 Pages: 2918-2927

    • DOI

      10.1016/j.jmb.2014.06.005

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] ゲノム構造と遺伝子発現変動2015

    • Author(s)
      河野暢明
    • Organizer
      生命情報科学若手の会
    • Place of Presentation
      慶應義塾大学鶴岡タウンキャンパス(山形県)
    • Year and Date
      2015-10-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] ゲノム構造から見る遺伝子発現変動2015

    • Author(s)
      河野暢明
    • Organizer
      2015年度グラム陽性菌ゲノム機能会議
    • Place of Presentation
      里湯昔話雄山荘(滋賀県)
    • Year and Date
      2015-08-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] The relationship between the replication axis and genome behavior on imbalanced Bacillus subtilis chromosome2015

    • Author(s)
      Kono N, Tomita M, Arakawa K
    • Organizer
      ISMB 2015
    • Place of Presentation
      Dublin(アイルランド)
    • Year and Date
      2015-07-10 – 2015-07-14
    • Related Report
      2014 Research-status Report
  • [Presentation] Revealed replication behavior on imbalanced Bacillus subtilis chromosome2014

    • Author(s)
      Kono N
    • Organizer
      3R symposium 2014
    • Place of Presentation
      Shizuoka(日本)
    • Year and Date
      2014-11-17 – 2014-11-21
    • Related Report
      2014 Research-status Report
  • [Presentation] 大規模マルチオミクス解析に向けたパスウェイブラウザ2014

    • Author(s)
      河野暢明
    • Organizer
      ゲノム微生物学若手の会
    • Place of Presentation
      静岡
    • Year and Date
      2014-09-28 – 2014-09-29
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] ゲノムから攻める細菌学~新たな合成生物学の挑戦~2014

    • Author(s)
      河野暢明
    • Organizer
      細菌学若手コロッセウム
    • Place of Presentation
      北海道
    • Year and Date
      2014-08-06 – 2014-08-08
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] ゲノム対称構造からのゲノムデザイン2014

    • Author(s)
      河野暢明
    • Organizer
      第13回微化研オープンセミナー
    • Place of Presentation
      東京
    • Year and Date
      2014-08-01
    • Related Report
      2014 Research-status Report
    • Invited
  • [Remarks] バクテリアの増殖効率とゲノム対称性の関係性を解明

    • URL

      http://www.iab.keio.ac.jp/jp/content/view/577/141/

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2017-05-10  

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