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Genome sequence of an ionic liquid-tolerant bacteria and exploration of ionic liquid-tolerant enzyme

Research Project

Project/Area Number 26870731
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field System genome science
Applied microbiology
Research InstitutionKindai University

Principal Investigator

KURATA Atsushi  近畿大学, 農学部, 講師 (10416000)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2015: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsイオン液体 / Bacillus 属細菌 / イオン液体耐性細菌 / 浸透圧ストレス / ゲノム解析 / 次世代シーケンサー / イオン液体耐性酵素 / プロテアーゼ / イオン液体耐性 / [BMIM][Cl] / 耐性酵素 / Bacillus属細菌
Outline of Final Research Achievements

Ionic liquids are various kinds of molten organic salts, which are composed of a bulky asymmetric cation and a small anion. Extensive studies of biocatalytic reactions using ionic liquids have been carried out. An ionic liquid [BMIM][Cl] improved the digestibility of biomasses but was toxic to the bacteria. [BMIM][Cl] deactivated various enzymes. Therefore, there exists demand for a [BMIM][Cl]-tolerant bacterial host and an enzyme. In this study, Bacillus amyloliquefaciens CMW1 was isolated from a Japanese fermented soybean paste. Strain CMW1 grows in the presence of 10% (v/v, 631 mM) [BMIM][Cl], which inhibits the growth of various microorganisms. The genome sequence of strain CMW1 was determined and allowed for characterization of the molecular mechanism of the ionic liquid tolerance. A protease from strain CMW1 functioned in various hydrophilic and hydrophobic ionic liquids, and exhibited tolerance to ionic liquid and halo, alkaline, and organic solvents.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (11 results)

All 2017 2016 2015 2014 Other

All Journal Article (5 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 5 results,  Open Access: 5 results,  Acknowledgement Compliant: 5 results) Presentation (4 results) (of which Invited: 1 results) Remarks (2 results)

  • [Journal Article] Antifungal peptidic compound from the deep-sea bacterium Aneurinibacillus sp. YR247.2017

    • Author(s)
      Atsushi Kurata, Yuto Yamaura, Takumi Tanaka, Chiaki Kato, Kaoru Nakasone, Noriaki Kishimoto.
    • Journal Title

      World Journal of Microbiology and Biotechnology

      Volume: 33 Pages: 72-80

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Complete genome sequence of the xylan-degrading subseafloor bacterium Microcella alkaliphila JAM-AC03092016

    • Author(s)
      Atsushi Kurata, Yuu Hirose, Naomi Misawa, Sachiko Wakazuki, Noriaki Kishimoto, Tohru Kobayashi
    • Journal Title

      Journal of Biotechnology

      Volume: 221 Pages: 32-33

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Properties of an ionic liquid-tolerant Bacillus amyloliquefaciens CMW1 and its extracellular protease2016

    • Author(s)
      Atsushi Kurata, Humiya Senoo , Yasuyuki Ikeda , Hideaki Kaida , Chiaki Matsuhara , Noriaki Kishimoto
    • Journal Title

      Extremophiles

      Volume: 20 Pages: 415-424

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Draft Genome Sequence of the Basidiomycetous Fungus Flammulina velutipes TR192016

    • Author(s)
      Atsushi Kurata, Yasuhisa Fukuta, Miho Mori, Noriaki Kishimoto, Norifumi Shirasaka
    • Journal Title

      Genome Announcements

      Volume: 4(3)

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Draft Genome Sequence of the Ionic Liquid-Tolerant Bacterium Bacillus amyloliquefaciens CMW12014

    • Author(s)
      Kurata A, Hirose Y, Misawa N, Hurunaka K, Kishimoto N.
    • Journal Title

      Genome Annoucements

      Volume: 2(5) e01051-14 Issue: 5 Pages: 1-2

    • DOI

      10.1128/genomea.01051-14

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Bacillus amyloliquefaciens CMW1由来の推定ペプチド遺伝子の異種発現と抗菌活性の検討2016

    • Author(s)
      山口大志、吉良将顕、古中康平、倉田淳志、岸本憲明
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌コンベンションセンター(北海道札幌市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] イオン液体耐性細菌とイオン液体耐性酵素の特性解明2015

    • Author(s)
      倉田淳志、妹尾文哉、池田泰之、貝田英明、古中康平、岸本憲明
    • Organizer
      極限環境生物学会2015年度(第16回)年会
    • Place of Presentation
      東京海洋大学 品川キャンパス(東京都港区)
    • Year and Date
      2015-11-08
    • Related Report
      2015 Research-status Report
  • [Presentation] イオン液体耐性プロテアーゼの特性とイオン液体耐性細菌のゲノム解読2015

    • Author(s)
      山口大志,倉田淳志,岸本憲明
    • Organizer
      第62回日本生化学会近畿支部例会
    • Place of Presentation
      立命館大学びわこ・くさつキャンパス(滋賀県草津市)
    • Year and Date
      2015-05-16
    • Related Report
      2015 Research-status Report
  • [Presentation] 特殊環境微生物のゲノム解析と有用遺伝子の探索2015

    • Author(s)
      倉田 淳志、妹尾 文哉、松原 千明、池田 泰之、貝田 英彰、岸本 憲明
    • Organizer
      第19回関西大学先端科学技術シンポジウム
    • Place of Presentation
      関西大学千里山キャンパス100周年記念会館(大阪府吹田市)
    • Year and Date
      2015-01-22 – 2015-01-23
    • Related Report
      2014 Research-status Report
    • Invited
  • [Remarks] ionic liquid tolerant serine protease

    • URL

      http://www.ncbi.nlm.nih.gov/protein/673921373

    • Related Report
      2015 Research-status Report
  • [Remarks] B amyloliquefaciens CMW1 genome sequencing project

    • URL

      http://www.ncbi.nlm.nih.gov/nuccore/BBLH00000000.1/

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2020-01-20  

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