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A RNA network of reproductive specific non-coding RNAs

Research Project

Project/Area Number 26870796
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Plant molecular biology/Plant physiology
Developmental biology
Research InstitutionOkinawa Institute of Science and Technology Graduate University

Principal Investigator

Reina Komiya  沖縄科学技術大学院大学, サイエンステクノロジーグループ, サイエンス・テクノロジー アソシエート (90631416)

Research Collaborator Le Tu Ngoc  
Ohouanagi Hajime  
Nonomura Ken-ichi  
Endo Masaki  
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords長鎖non-coding RNA / small RNA / 非コードゲノム / イネ / 生殖 / non-coding RNA / ノンコーディングRNA
Outline of Final Research Achievements

Successful sexual reproduction in flowering plants depends on accurate germ cell differentiation. Molecular mechanisms of germ cell development during pre-meiotic stages remain unknown in plants. I have identified over 700 types of long intergenic non-coding RNAs (lincRNAs) specifically expressed during rice reproductive stages. These lincRNAs that contain the consensus sequences of microRNA 2118 (miR2118), are precursors of 21-nucleotides small RNAs (Komiya et al., 2014, Komiya 2017). Furthermore, I am engaged in two main projects using rice: 1. Roles of over 700 lincRNAs and 21-nt small RNAs in early reproduction and 2. Transcriptional regulation of 700 lincRNAs by CRF1. Some lincRNA mutants and crf1 mutants showed sterility. Furthermore, some lincRNAs expressions are suppressed in crf mutants. These results suggest that multiple lincRNAs may regulate early reproduction and CRF is required for development of rice reproductive tissues (Komiya unpublished data).

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (12 results)

All 2017 2016 2015 2014 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (7 results) (of which Int'l Joint Research: 1 results,  Invited: 3 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Biogenesis of diverse plant phasiRNAs involves an miRNA-trigger and Dicer-processing2016

    • Author(s)
      Reina Komiya
    • Journal Title

      Journal of Plant Research

      Volume: 130 Issue: 1 Pages: 17-23

    • DOI

      10.1007/s10265-016-0878-0

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Rice Germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs.2014

    • Author(s)
      Komiya R, Ohyanagi H, Niihama M, Watanabe T, Nakano M , Kurata N, and Nonomura K
    • Journal Title

      The Plant Journal

      Volume: (In Press) Issue: 3 Pages: 385-397

    • DOI

      10.1111/tpj.12483

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] Small RNAs derived from reproductive specific lincRNAs in the Family Poaceae2017

    • Author(s)
      Reina Komiya
    • Organizer
      STG Forum
    • Place of Presentation
      沖縄県 恩納村
    • Year and Date
      2017-02-03
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生殖lincRNAとmiR2118によるイネの新しい生殖メカニズム2016

    • Author(s)
      小宮 怜奈
    • Organizer
      新学術 RNAタクソノミ 第三回領域班会議
    • Place of Presentation
      北海道 北広島市
    • Year and Date
      2016-10-25
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] The biogenesis of small RNAs derived from over 700 reproductive lincRNAs2015

    • Author(s)
      Reina Komiya
    • Organizer
      日本植物学会第79回大会
    • Place of Presentation
      新潟コンベンションセンター
    • Year and Date
      2015-09-05
    • Related Report
      2015 Research-status Report
  • [Presentation] 生殖lincRNAとmiR2118によるイネの新しい生殖メカニズム2015

    • Author(s)
      小宮 怜奈
    • Organizer
      新学術領域会議
    • Place of Presentation
      リゾーピア箱根
    • Year and Date
      2015-06-10
    • Related Report
      2015 Research-status Report
  • [Presentation] イネの生殖lincRNAを介したsmall RNA生合成経路2015

    • Author(s)
      小宮 怜奈
    • Organizer
      奈良先端科学技術大学院大学 (NAIST) 内部交流セミナー
    • Place of Presentation
      奈良先端科学技術大学院大学, 奈良, 日本
    • Year and Date
      2015-01-21
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] イネの生殖lincRNAを介したsmall RNA生合成経路2015

    • Author(s)
      小宮 怜奈
    • Organizer
      第4回 植物RNA研究者ネットワークシンポジウム 『RNAから植物を考える ~植物をささえるRNA制御~』
    • Place of Presentation
      京都大学, 京都, 日本
    • Year and Date
      2015-01-19 – 2015-01-20
    • Related Report
      2014 Research-status Report
  • [Presentation] Rice Germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs2014

    • Author(s)
      Komiya Reina
    • Organizer
      The 38th Naito Conference Molecule-based biological systems
    • Place of Presentation
      Chateraise Gateaux Kingdom Sapporo, Japan
    • Year and Date
      2014-10-07 – 2014-10-10
    • Related Report
      2014 Research-status Report
  • [Book] 実験医学 ノンコーディングRNAテキストブック2015

    • Author(s)
      編集 塩見美喜子、中川真一、浅原弘嗣 (小宮 怜奈;植物分野執筆)
    • Total Pages
      249
    • Publisher
      羊土社
    • Related Report
      2015 Research-status Report
  • [Book] PIWI-interacting RNAs2014

    • Author(s)
      Reina Komiya and Ken-Ichi Nonomura
    • Total Pages
      249
    • Publisher
      Humana Press
    • Related Report
      2014 Research-status Report
  • [Remarks] Science and Technology Group Reina Komiya, Ph.D.

    • URL

      https://groups.oist.jp/ja/stg/reina-komiya-phd

    • Related Report
      2016 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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