Genomic analysis of ancient rice remains
| Project/Area Number |
26890010
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| Research Category |
Grant-in-Aid for Research Activity Start-up
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| Allocation Type | Single-year Grants |
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| Research Field |
Genome biology
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| Research Institution | The University of Tokyo |
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Principal Investigator |
Kumagai Masahiko 東京大学, 理学(系)研究科(研究院), 助教 (80738716)
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| Project Period (FY) |
2014-08-29 – 2016-03-31
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| Project Status |
Completed (Fiscal Year 2015)
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| Budget Amount *help |
¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
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| Keywords | 古代ゲノミクス / 次世代シーケンサー / 分子進化 / 栽培イネ / 古ゲノミクス / 葉緑体ゲノム / 栽培植物 / イネ / 進化 / 次世代シーケンサ |
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| Outline of Final Research Achievements |
The domestication history of two Asian cultivated rice varietal groups, japonica and indica, are one of the big interests; how have they been related and how have domestication related genes changed. To answer these questions, the investigation of DNAs of ancient rice remains excavated from archaeological sites is promising. In this study, experimental procedures for paleogenomics, obtaining DNAs applicable to NGS technology from ancient rice remain, were established. And also, information basis of chloroplast genome sequences to analyze ancient rice data were constructed by phylogenetic analyses for 1375 modern rice strains.
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Report
(3 results)
Research Products
(6 results)
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[Journal Article] Whole-genome analysis of herbicide-tolerant mutant rice generated by Agrobacterium-mediated gene targeting2015
Author(s)
Endo M, Kumagai M, Motoyama R, Sasaki-Yamagata H, Mori-Hosokawa S, Hamada M, Kanamori H, Nagamura Y, Katayose Y, Itoh T, Toki S
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Journal Title
Plant and Cell physiology
Volume: 56
Issue: 1
Pages: 116-125
DOI
Related Report
Peer Reviewed / Open Access / Acknowledgement Compliant
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[Journal Article] Development of transcriptome shotgun assembly-derived markers in bunching onion (Allium fistulosum)2015
Author(s)
Tsukazaki H, Yaguchi S, Sato S, Hirakawa H, Katayose Y, Kanamori H, Kurita K, Itoh T, Kumagai M, Mizuno S, Hamada M, Fukuoka H, Yamashita K, McCallum J, Shigyo M, and Wako T
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Journal Title
Molecular Breeding
Volume: 35
Issue: 1
Pages: 55-55
DOI
Related Report
Peer Reviewed
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