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Time-resolved EXAFS method for analyses of dynamical structure of biopolymers

Research Project

Project/Area Number 61880025
Research Category

Grant-in-Aid for Developmental Scientific Research

Allocation TypeSingle-year Grants
Research Field 生物物性学
Research InstitutionThe Institute of Physicaland Chemical Research

Principal Investigator

IIZUKA Tetsutaro  The Institute of Physical and Chemical Research, 生体物理化学研究室, 主任研究員 (30029475)

Co-Investigator(Kenkyū-buntansha) SHIRO Yoshitsugu  The Institute of Physical and Chemical Research, 生体物理化学研究室, 研究員 (70183051)
高橋 勝緒  理化学研究所, 生体物理化学研究室, 副主任研究員 (30087580)
SHIMADA Hideo  School of Medicine, Keio University, 医学部, 助手 (80095611)
MAKINO Ryu  School of Medicine, Keio University, 医学部, 講師 (40101026)
TAKAHASHI Katsuo  The Institute of Physical and Chemical Research
Project Period (FY) 1986 – 1988
Project Status Completed (Fiscal Year 1988)
Budget Amount *help
¥11,800,000 (Direct Cost: ¥11,800,000)
Fiscal Year 1988: ¥800,000 (Direct Cost: ¥800,000)
Fiscal Year 1987: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 1986: ¥10,000,000 (Direct Cost: ¥10,000,000)
KeywordsTime-Resolved EXAFS / Laser-Photolysis / Myoglobin / Hemoglobin / XANES / Peroxidase / Cytochrome P450 / 動的構造解析 / EXAFS / ヘム蛋白質 / フラッシュフォトリシス / 生体高分子の動的構造解析 / 放射光 / レーザーフォトリシス / ミオグロビンCO錯体 / 螢光X線 / X線吸収スペクトル;ヘモグロビン
Research Abstract

Recently X-ray absorption spectroscopy has been widely applied to metallo-proteins for the purpose of determining the local structure in the vicinity of metal ions. In contrast with X-ray crystallography, this mothod has a great advantage in its applicability to the structural analyses of either solution or amorphous samples. In the case of iron, the absorption spectrum originating from the excitation of K-electron in is orbital of iron is observed around 7.1 KeV and gives fine structures abbreveated as EXAFS(Extended X-ray Absorption Fine Structure) and XANES(X-ray Absorption Near Edge Structure). These fine structures reflect both environmental and electronic structures of iron such as distance between iron and nearest ligands, iron coordination numbers, species of the nearest ligands, bond angles, 1s-3d transition, and etc.
In this study we tried to develop a system for analyses of dynamic structures of metallo-proteins and -enzymes, by employing an X-ray fluorescence-detector constructed by Oyanagi et al. at the Photon Factory of Tsukuba.
(1) We devised optical monitor and laser-photolysis systems for detecting and exciting the electronic states of samples, both of which were conected to the X-ray fluorescence-detector above together with several interfaces and optical fibers.
(2) In order to test the whole system, typical and stable hemoproteins such as sperm whale myoglobin and porcine hemoglobin were employed. The CO complexes of these proteins have great advantages in testing the system due to the reversible properties in photo-induced dissociation and thermal reconbination of CO from and to heme-iron of the proteins.
(3) By using above system, we measured X-ray absorption spectra of various hemoproteins including myoglobin, hemoglobin, peroxidase and cytochrome P450.

Report

(3 results)
  • 1988 Annual Research Report   Final Research Report Summary
  • 1986 Annual Research Report
  • Research Products

    (24 results)

All Other

All Publications (24 results)

  • [Publications] Oyanagi,H: J.Phys.Soc.Japan. 56. 3381-3388 (1987)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Iizuka,T.: Keio J.Med.36. 148-167 (1987)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Uno,T.: J.Biol.Chem.262. 4549-4556 (1987)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Hori,H.: J.Biol.Chem.264. (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] 飯塚哲太郎: 分光研究. 36. 216-227 (1987)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] 飯塚哲太郎: 学術月報. 41. 57 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Oyanagi,H.: "Local Structure of Heme-Iron.Studied by High-Resolution XANES;Thermal Spin Equilibrium in Myoglobin.In:Springer Series in Bio-physics Vol.2---Biophysics and Synchrotron Radiation." Springer-Verlag, (pp99-106) (1987)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Saigo,S.: "A Rapid Freeze EXAFS Method for the Studies of Intermediate in Fast Enzymatic Reactions In:Springer Series in Biophysics Vol.2---Biophysics and Synchrotron Radiation." Springer-Verlag, (pp130-135) (1987)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Oyanagi, H: "Local Structure of Heme-Iron Studied by High-Resolution XANES; Thermal Spin Equilibrium in Myoglobin." J. Phys. Soc. Japan. 56. 3381-3388 (1987)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Iizuka, T.: "Flash Photolysis Studies of Respiratory Hemoproteins: Analysis of the Factors Modulating the Reactivity of Heme-Iron, Active Center of the Proteins." Keio J. Med.36. 148-167 (1987)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Uno, T.: "Two Types of Conformers with Distinct Fe-C-O Configuration in the Ferrous CO Complex of Horseradish Peroxidase : Resonance Raman and Infrared Spectroscopic Studies with Native and Deuteroheme-Substituted Enzymes." J. Biol. Chem.262. 4549-4556 (1987)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Hori, H.: "Single-Crystal EPR Study of Novel Azide Complex of Cyanogen Bromide-Modified Myoglobin : Influence of Specific Modification of the Heme Distal Histidyl Residue on the Ligand Binding Structure." J. Biol. Chem.264. (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Oyanagi, H.: Local Structure of Heme-Iron Studied by High-Resolution XANES; Thermal Spin Equilibrium in Myoglobin In: Springer Series in Biophysics Vo1.2 --- Biophysics and Synchrotron Radiation.Springer-Verlag, 99-106 (1987)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Kawato,S.: J.Biochem.104. 188-191 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] 飯塚哲太郎: 学術月報. 41. 57 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] 青野正和: ISOTOPE NEWS. 406. 23-24 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Hori,H.: J.Biol.Chem.264. (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] Shiro,Y.: Biochemistry. (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] 城宜嗣: "「新生化学実験法」第V巻高次構造(状態解析)のうち「3・1吸光法」" 丸善, (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] 大柳宏之: 生物物理. 26巻Suppl. S68-S68 (1986)

    • Related Report
      1986 Annual Research Report
  • [Publications] 大柳宏之: 生物物理. 26巻Suppl. S69-S69 (1986)

    • Related Report
      1986 Annual Research Report
  • [Publications] 飯塚哲太郎: 分光研究. 36巻3号. (1987)

    • Related Report
      1986 Annual Research Report
  • [Publications] Hiroyuki Oyanagi: Solid State Communication. (1987)

    • Related Report
      1986 Annual Research Report
  • [Publications] Satoshi Saigo: Proceedings of International Conference on Biophysics and Synchrotron Radiation(Frascati,Italy,July,14-16,1986). Springer Verlag. (1987)

    • Related Report
      1986 Annual Research Report

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Published: 1987-03-31   Modified: 2016-04-21  

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