• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Ultraviolet Resonance Raman Spectroscopic Study on Regulatory Protein-Nucleic Acid Interactions

Research Project

Project/Area Number 62430004
Research Category

Grant-in-Aid for General Scientific Research (A)

Allocation TypeSingle-year Grants
Research Field 構造化学
Research InstitutionTohoku University

Principal Investigator

HARADA Issei  Tohoku Univ., Pharm. Inst., Professor, 薬学部, 教授 (70011583)

Co-Investigator(Kenkyū-buntansha) TOYAMA Akira  Tohoku Univ., Pharm. Inst., Res. Assist., 薬学部, 教務職員 (60217560)
HASHIMOTO Shinji  Tohoku Univ., Pharm. Inst., Res. Assoc., 薬学部, 助手 (50192696)
UCHIDA Kiyoshi  Tohoku Univ., Pharm. Inst., Res. Assoc., 薬学部, 助手 (70129352)
TAKEUCHI Hideo  Tohoku Univ., Pharm. Inst., Assoc. Prof., 薬学部, 助教授 (30111454)
廣谷 恵理  東北大学, 薬学部, 教務職員 (10192303)
古川 行夫  東北大学, 薬学部, 助手 (50156965)
Project Period (FY) 1987 – 1990
Project Status Completed (Fiscal Year 1990)
Budget Amount *help
¥24,700,000 (Direct Cost: ¥24,700,000)
Fiscal Year 1990: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 1989: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 1988: ¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 1987: ¥17,500,000 (Direct Cost: ¥17,500,000)
KeywordsUltraviolet Resonance Raman Rpectroscopy / Regulatory Protein / Protein Nucleic Acid Interactions / Spectrum-Structure Relation / 蛋白ー核酸相互作用 / DNA
Research Abstract

The purpose of the research is threefold : construction of ultraviolet Raman apparatus, tabulation of UV Raman marker bands useful in structural study of proteins and nucleic acids, and UV resonance Raman (UVRR) spectroscopic study on cyclic AMP receptor protein (CRP) and the CRP-cAMP complex in solution.
(1) UV Raman apparatus
UV radiation is generated by a system consisting of a Nd : YAG laser (30 Hz), a harmonic generator (KDP or BBO), and an H_2-Raman shifter. Scattered light from a sample is dispersed (2nd order) by an f/6.8 80-cm double monochromator equipped with 600 g/mm gratings blazed at 500 nm and detected with a doubly intensified diode array of 700 pixels.
(2) Table of UVRR marker bands and its applications
UVRR spectra of peptides containing Pro, Trp, Tyr, Phe, and His, nucleosides, nucleotides, and the related compounds have been studied extensively and a list of useful structural marker bands is tabulated. Good-quality UVRR spectra of Cu, Zu-superoxide dismutase and bacteriorhodopsin have been recorded for the first time, and some pieces of structural information on the proteins are obtained on the basis of the table.
(3) Structure of CRP and CRP-cAMP in dilute solution
Upon uptake of a cAMP molecule in one of the two subunits of CRP, drastic change occurs in the beta-sheet structure of the other subunit as well as the bound subunit. The adenine-ribose bond conformation is syn in the bound cAMP and the binding form is stabilized by H-bonding at N7 and C6NH_2 with side chains of the protein.

Report

(5 results)
  • 1990 Annual Research Report   Final Research Report Summary
  • 1989 Annual Research Report
  • 1988 Annual Research Report
  • 1987 Annual Research Report

Research Products

(32 results)

All Other

All Publications (32 results)

  • [Publications] Takashi Miura: "Characterizaton of Individual Tryptophan Side Chains in Protein Using Raman Spectroscopy and HydrogenーDeuterium Exchange Kinetics" Biochemistry. 27. 88-94 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Hideo Takeuchi: "Vibrational Spectra and Normal Coordinate Analysis of pーCresol and Its Deuterated Analogs" Spectrochim.Acta. 44A. 749-761 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Hideo Takeuchi: "Effects of Hydrogen Bonding on the Tyrosine Raman Bands in the 1300ー1150cm^<ー1> Region" J.Raman Spectrosc.20. 233-237 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Takashi Miura: "Tryptophan Raman Bands Sensitive to Hydrogen Bonding and SideーChain Conformation" J.Raman Spectrosc.20. 667-671 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Shinji Hashimoto: "Ultraviolet Resonance Raman Spectra of Cu,ZnーSuperoxide Dismutase:Detection of an Imidazolate Bridge between the Metal Ions in Solutior" J.Am.Chem.Soc.111. 8926-8928 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Issei Harada: "Ultraviolet Resonance Raman Spectra of Bacteriorhodopsin in the LightーAdapted and DarkーAdapted States" J.Am.Chem.Soc.112. 2443-2445 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Hideo Takeuchi: "Ultraviolet Resonance Raman Specrtoscopy of XーProline Bonds:A New Marker Band of Hydrogen Bonding at the Imide C=O Site" J.Raman Spectrosc.21. 509-515 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Akira Toyama: "Ultraviolet Resonance Raman Spectra of Adenine,Uracil and Thymine Derivatives in Several Solvents.Correlation between Band Frequencies and HydrogenーBonding States of the Nucleic Acid Bases" J.Mol.Struct.242. 87-98 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Akira Toyama: "Ultraviolet Resonance Raman Spectra of Cyclic AMP Receptor Protein:Structural Change Induced by Cyclic AMP Binding and the Conformation of ProteinーBound Cyclic AMP" J.Am.Chem.Soc.113. (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Takashi Miura: "Raman Spectroscopic Characterization of Tryptophan Side Chains in Lysozyme Bound to Inhibitors:Role of the Hydrophobic Box in the Enzymatic Function" Biochemistry. 30. (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] T. Miura, H. Takeuchi, and I. Harada: "Characterization of Individual Tryptophan Side Chains in Proteins Using Raman Spectroscopy and Hydrogen-Deuterium Exchange Kinetics" Biochemistry. 27. 88-94 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] H. Takeuchi, N. Watanabe, and I. Harada: "Vibrational Spectra and Normal Coordinate Analysis of p-Cresol and Its Deuterated Analogs" Spectrochem. Acta. 44A. 749-761 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] H. Takeuchi, N. Watanabe, Y. Satoh, and I. Harada: "Effects of Hydrogen Bonding on the Tyrosine Raman Bands in the 1300-1150 cm^<-1> Region" J. Raman Spectrosc.20. 233-237 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] T. Miura, H. Takeuchi, and I. Harada: "Tryptophan Raman Bands Sensitive to Hydrogen Bonding and Side-Chain Conformation" J. Raman Spectrosc.20. 667-671 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] S. Hashimoto, S. Ohsaka, H. Takeuchi, and I. Harada: "Ultraviolet Resonance Raman Spectra of Cu, Zu-Superoxide Dismutase : Detection of an Imidazolate Bridge between the Metal Ions in Solution" J. Am. Chem. Soc.111. 8926-8928 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] I. Harada, T. Yamagishi, K. Uchida, and H. Takeuchi: "Ultraviolet Resonance Raman Spectra of Bacteriorhodopsin in the Light-Adapted and Dark-Adapted States" J. Am. Chem. Soc.112. 2443-2445 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] H. Takeuchi and I. Harada: "Ultraviolet Resonance Raman Spectroscopy of X-Proline Bonds : A New Marker Band of Hydrogen Bonding at the Imide C=O Site" J. Raman Spectrosc.21. 509-515 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] A. Toyama, H. Takeuchi, and I. Harada: "Ultraviolet Resonance Raman Spectra of Adenine, Uracil and Thymine Derivatives in Several Solvents. Correlation between Band Frequencies and Hydrogen-Bonding States of the Nucleic Acid Bases" J. Mol. Structure. 242. 87-98 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] A. Toyama, E. Kurashiki, Y. Watanabe, H. Takeuchi, I. Harada, H. Aiba, B. -J. Lee, and Y. Kyogoku: "Ultraviolet Resonance Raman Spectra of Cyclic AMP Receptor Protein : Structural Change Induced by Cyclic AMP Binding and the Conformation of Protein-Bound Cyclic AMP" J. Am. Chem. Soc.(1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] T. Miura, H. Takeuchi, and I. Harada: "Raman Spectroscopic Characterization of Tryptophan Side Chains in Lysozyme Bound to Inhibitors : Role of Hydrophobic Box in the Enzymatic Function" Biochemistry. (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Hideo Takeuchi: "Ultraviolet Resonance Raman Spectroscopy of XーProline Bonds:a New Marker Band of Hydrogen Bonding at the Imide C=O Site" Journal of Raman Spectroscopy. 21. 509-515 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Akira Toyama: "Ultraviolet Resonance Raman Spectra of Adenine,Uracil and Thymine Derivatives in Several Solvents.Correlation between Band Frequencies and HydrogenーBonding States of the Nucleic Acid Bases" Journal of Molecular Structure. 242. 87-98 (1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Hideo Takeuchi: "Raman Bands of NーDeuterated Histidinium as Markers of Conformation and Hydrogen Bonding" Journal of Raman Spectroscopy. 22. (1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Akira Toyama: "Ultraviolet Resonance Raman Spectra of Cyclic AMP Receptor Protein:Structural Change Induced by Cyclic AMP Binding and the Conformation of ProteinーBound Cyclic AMP" Journal of the American Chemical Society. 113. (1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Takashi Miura: "Raman SPectroscopic Characterization of Tryptophan Side Chains in Lysozyme Bound to Inhibitors:Role of the Hydrophobic Box in the Enzymatic Functions" Biochemistry.

    • Related Report
      1990 Annual Research Report
  • [Publications] Hideo Takeuchi: "Effects of Hydrogen Bonding on the Tyrosine Raman Bands in the 1300ー1150cm^<-1>Region" Journal of Raman Spectroscopy. 20. 233-237 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] Takashi Miura: "Tryptophan Raman Bands Sensitive to Hydrogen Bonding and SideーChain Conformation" Journal of Raman Spectroscopy. 20. 667-671 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] Shinji Hashimoto: "Ultraviolet Resonance Raman Spectra of Cu,ZuーSuperoxide Dismutase:Detection of an Imidazolate Bridge between the Metal Ions in Solution" Journal of the American Chemical Society. 111. 8926-8928 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] Issei Harada: "Ultraviolet Resonance Raman Spectra of Bacteriorhodopsin in the LightーAdapted and DarkーAdapted States" Journal of the American Chemical Society. 112. (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] Hideo,Takeuchi: Spectrochim.Acta. 44A. 749-761 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Hideo,Takeuchi: J.Raman Spectrosc.(1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] Takashi Miura: Biochemistry. 27. 88-94 (1988)

    • Related Report
      1987 Annual Research Report

URL: 

Published: 1987-03-31   Modified: 2018-02-02  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi