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Structures and Reactivities of Higher-valent Reaction Intermediates of Heme-containing Enzymes

Research Project

Project/Area Number 62480460
Research Category

Grant-in-Aid for General Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 代謝生物化学
Research InstitutionKeio University, School of Medicine

Principal Investigator

MAKINO Ryu  Associate Professor, School of Medicine, Keio University, 医学部, 講師 (40101026)

Co-Investigator(Kenkyū-buntansha) NISHIMURA Yoshifumi  Assistant Professor, Pharmaceutical Science, Tokyo Universit, 薬学部, 助手 (70107390)
WATANABE Yoshihito  Assistant Professor, School of Medicine, Keio University, 医学部, 助手 (10201245)
Project Period (FY) 1987 – 1988
Project Status Completed (Fiscal Year 1988)
Budget Amount *help
¥6,200,000 (Direct Cost: ¥6,200,000)
Fiscal Year 1988: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 1987: ¥4,700,000 (Direct Cost: ¥4,700,000)
KeywordsCytochrome P450 / Horseradish peroxidase / Chloroperoxidase / Oxygenated form / Resonance Raman spectrum / 酸素化型反応中間体 / 赤外吸収スペクトル / チトクロムP450cam / 酸素化型 / アロマターゼ反応 / O_2伸縮振動
Research Abstract

Heme-containing enzymes yield nearly identical reaction intermediates such as Fe(III)-O2^- and Fe(IV)=O species. Nevertheless, the reactive oxygen in the intermediates was incorporated into the substrate in the reaction by cytochrome P450, while that is meraly reduced to water in the peroxidase reaction. To elucidate the reactivity difference, effects of the fifth axial and distal side amino acids of the heme-iron on the structure of the heme-bound ligand were analyzed by resonance Raman and infrared spectroscopic methods. The findings are summarized as follows; 1) From the comparison of the stretching frequencies of nitric oxide (NO) bound to cytochrome P450cam, chloroperoxidase (CPO) and horseradish peroxidase (HRP), it was suggested that the cystein thiolate as the fifth axial ligand in P450cam and CPO donated the electron density to the heme-bound ligand, thereby decreasing the N-O bond strength. 2) The presence of a dissociable amino acid residue was found to locate in the distal … More side of the heme in peroxidases (HRP and CPO), while that was absent in P450cam. Further, in a reaction intermediate, compound II, of HRP the distal amino acid residue was responsible for hydrogen-bond fromation with the oxygen of Fe(IV)=O, thereby regulating the reactivity of compound II. In all the enzymes examined, the addition of substrate affected the C-O stretching frequency of the ligand carbon monoxide, indicating that the bound-ligand interacted with the suvstrate. 3) The stretching vibration of the bound oxygen in the oxygenated form of CPO located at around 1130 cm^<-1> which essentially agreed with those of P450cam and myoglobin.
These results suggest that the reactivity of the heme-bound oxygen, i.e. the function of the heme-enzymes is determined by the interaction with the amino acid residue in the distal side of the heme-iron, rather than the effect of the electron conating capacity of the fifth axial ligand. Interestingly, the O-O stretching frequency of oxygenated forms was found to be independent of an electronic character of the fifth axial amino acid residue. Less

Report

(3 results)
  • 1988 Annual Research Report   Final Research Report Summary
  • 1987 Annual Research Report
  • Research Products

    (32 results)

All Other

All Publications (32 results)

  • [Publications] Uno,T.;Nishimura,Y.;Tsuboi,M.;Makino,R.;Iizuka,Y.;Ishimura,Y.: Journal of Biological Chemistry. 262. 4559-4556 (1987)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Tanaka,T.;Kanegasaki,S.;Makino,R.;Iizuka T.;Ishimura,Y.: Biochemical and Biophysical Research Communications. 144. 606-612 (1987)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Oyanagi,H.Iizuka,T.;Matsushita,T.;Saigo,S.;Makino,R.;Ishimura,Y.;Ishiguro,T.: Journal of physical Society of Japan. 56. 3381-3388 (1987)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Tanaka,T.;Makino,R;Iizuka,T.;Ishimura,Y.;Kanegasaki,S.;: Journal of Biological Chemistry. 263. 13670-13676 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Nakamura,Y.;Ohtaki,S.;Makino,R;Tanaka,T.;Ishimura,Y.;: Journal of Biological Chemistry. 264. (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Shiro,Y/Iizuka,T/Makino,R/Ishimurq,Y/Morishima,I: Journal of American Chemical Society.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] 牧野龍,石村巽: "蛋白質 核酸 酵素 (トリプトファン二原子酸素添加酵素とその反応機構)" 共立出版, 9 (1987)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] 牧野龍: "生化学(ヘムを含む酸素添加酵素の酸素活性化機構-ヘム置換法による解析)" 日本生化学会, 5 (1987)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Makino,R.;Uno,T.;Nishimura,Y.;Iizuka,T.;Tsuboi,M.;Isthimura,Y.: "The role of oxygen in chemistry and biochemistry (Coodination structures and reactivities of compound II in iron and manganese horseradish peroxidase)" Elsevier, 5 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Ishimura,Y.; Makino,R.;Tanaka,T.;Iizuka,T.;Kanegasaki,S.;: "Oxidases and related redox systems (NADPH oxidase in human and porcine neutrophils;Stoichiometry between O_2 consumption and O_2-formation)" Alan R.Liss, 11 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Nakamura,Y.;Ohtaki,S.;Makino,R.;Tanaka,T.;Ishimura,Y.: "Thyroid 88 (Calcium dependent NADPH-oxidase in thyroid plasma membrane fraction produces superoxide anion as detected by diacetyldeuteroheme-substituted horseradish peroxidase" Excerpta Medica,Amsterdam, 4 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Uno, T.; Nishimura, Y.; Tsuboi, M.; Makino, R.; Iizuka, T.; Ishimura, Y: "Two Types of Confomers with Distinct Fe-C-O Configulation in the Ferrous CO Complex of Horseradish Peroxidase -- A Resonance Raman and Infrared Spectroscopic Studies with Native and Deuteroheme-substituted Enzymes" Journal of Biological Chemistry. 262. 4559-4556 (1987)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Tanaka, T.; Kanegasaki, S.; Makino, R.; Iizuka, T.; Ishimura, Y.: "Saturated and trans-Unsaturated Fatty Acid Elicit High Level of Superoxide Generation in Intact and Cell-free Preparations of Neutrophils" Biochemical and Biophysical Research Communication. 144. 606-612 (1987)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Oyanagi, H.; Iizuka, T.; Matsushita, T.; Saigo, S.; Makino, R.; Ishimura, Y.; Ishiguro, T.: "Local Structure of Heme-iron Studied by High-resolution XANES; Thermal Spin Equilibrium in Myoglobin" Journal of Physical Society of Japan. 56. 3381-3388 (1987)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Tanaka, T.; Makino, R.; Iizuka, T.; Ishimura, Y.; Kanegasaki, S.: "Activation by Saturated and Monounsaturated Fatty Acids of the O_<2^^->-generating Systems in a Cell-free Preparation from Neutrophils" Journal of Biological Chemistry. 263. 13670-13676 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Nakamura, Y.; Ohtaki, S.; Makino, R.; Tanaka, T.; Ishimura, Y.: "Superoxide Anion is the Initial Product in the Hydrogen Peroxide Formation Catalyzed by NADPH-oxidase in Porcine Thyroid Plasma Membrane" Journal of Biological Chemistry. 264. (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Shiro, Y.; Iizuka, T.; Makino, R.; Ishimura, Y.; Morishima, I.: " ^<15>N-NMR Study on Cyanide (C^<15>N-) Complex of Cytochrome P-450cam. Effect of D-Camphor and putidaredoxin on the Iron-ligand Structure" Journal of American Chemical Society.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Ishimura, Y.; Makino, R.; Tanaka, T.; Iizuka, T.; Kanegasaki, S.: NADPH Oxidase in Human and Porcine Neutrophils: Stoichiometry between O_2 consumption and O_2- Formation (in Oxidases and Related Redox Systems). Alan R. Liss inc., 429-493 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Makino, R.; Uno, T.; Nishimura, Y.; Iizuka, T.; Tsuboi, M.; Ishimura, Y.: Coordination Structures and Reactivities of Compound II in Iron and Manganese Horseradish Peroxidase (in The Role of Oxygen Chemistry and Biochemistry). Elsevier, Amsterdam, 477-482 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Nakamura, Y.; Ohtaki, S.; Makino, R.; Ishimura, Y.: Calcium Dependent NADPH-oxidase in Thyroid Plasma Membrane Fraction Produces Superoxide Anion as Detected by Diacetyldeuteroheme-substituted Horseradish Peroxidase (in Thyroid 88). Excerpta Medica, Amsterdam, 623-626 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1988 Final Research Report Summary
  • [Publications] Tanaka,T.,;Makino,R.,;Iizuka,T.,;Ishimura,Y.,;Kanegasaki,S.: Journal of Biological Chemistry. 263. 13670-13676 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Nakamura,Y.,;Ohtaki,S.;Makino,R.,;Tanaka,T.,;Ishimura,Y.: Journal of Biological Chemistry. 264. (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] Shiro,Y.,;Iizuka,T.,;Makino,R.,;Ishimura,Y.;Morishima,I.: Journal of American Chemical Society.

    • Related Report
      1988 Annual Research Report
  • [Publications] Makino,R.,;Uno,T.,;Nishimura,Y.,;Iizuka,T.,;Tuboi,M.,;Ishimura,Y.: "The role of oxygen in chemistry and biochemistry (Coodination structures and reactivities of compound II in iron and manganese horseradish peroxidase)" Elsevier, 477-482 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Ishimura,Y.;Makino,R.,;Tanaka,T.,;Iizuka,T.,;Kanegasaki,S.: "Oxidasses and related redox systems(NADPA oxidase in human and porcine neutrophils:Stoichiometry between O_2 consumption and O_2-formation)" Alan R. Liss Inc., 179-190 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Nakamura,Y.,;Ohtaki,S.;Makino,R.,;Tanaka,T.,;Ishimura,Y.: "Thyroid 88 (Calcium dependent NADPH-oxidase in thyroid plasma membrane fraction produces superxide anion as detected by diacetyldeuteroheme-substituted horseradish perxidase" Excerpta Medica,623-626 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] 牧野龍: 生化学. 56-4. 191-204 (1987)

    • Related Report
      1987 Annual Research Report
  • [Publications] Uno.T;Nishimura.Y;Tsuboi.M;Makino.R;Iizuka.T;&Ishimura.Y: Journal of Biological Chemistry. 262. 4549-4556 (1987)

    • Related Report
      1987 Annual Research Report
  • [Publications] Tanaka.T;Kanegasaki.S;Makino.R;Iizuka.Y;&Ishimura.Y: Biochimical and Biophysical Research Communications. 144. 606-612 (1987)

    • Related Report
      1987 Annual Research Report
  • [Publications] Oyanagi.H;Iizuka.T;Matsushita.T;Saigo.S;Makino.R;Ishimura.Y;&Ishiguro.T: Journal of Physical Society of Japan. 56. 3381-3388 (1987)

    • Related Report
      1987 Annual Research Report
  • [Publications] 牧野龍,石村巽: "蛋白質,核酸,酵素,(増刊VOL62血色素の分子生理と分子病理)トリプトファン二原子酸素添加酵素とその反応機構" 共立出版, 752-756 (1987)

    • Related Report
      1987 Annual Research Report
  • [Publications] Makino.R;Uno.T;Nishimura.Y;Iizuka.T;Tsuboi.M;&Ishimura.Y: "The role of oxygen in chemistry and diochimistry-Coordination structure and reactivities of compound II in iron and manganese horseradish peroxidase" Elsevier Publishing Company, 477-482 (1988)

    • Related Report
      1987 Annual Research Report

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Published: 1987-04-01   Modified: 2016-04-21  

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