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Interaction between soil bacteria and plant cells

Research Project

Project/Area Number 62480463
Research Category

Grant-in-Aid for General Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 分子遺伝学・分子生理学
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

OKA Atsuhiro  Kyoto Univ., Inst. Chem. Res. Associate Prof., 化学研究所, 助教授 (10093212)

Project Period (FY) 1987 – 1989
Project Status Completed (Fiscal Year 1989)
Budget Amount *help
¥6,600,000 (Direct Cost: ¥6,600,000)
Fiscal Year 1989: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 1988: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 1987: ¥4,100,000 (Direct Cost: ¥4,100,000)
KeywordsPlant tumor / Hairy root / Crown gall / Ri plasmid / Ti plasmid / vir genes / Transcription factor / DNA-protein interaction / クラウンゴール / 自律増殖 / 転写調節 / 自律増殖能 / 複製開始
Research Abstract

1. Of about 30-kb region of the virulence (vir) loci, essential for T-DNA transfer from bacteria to plant cells, on the hairy-root-inducing plasmid (pRiA4) from Agrobacterium rhizogenesare, a 17-kb region was sequenced. The overall organization and structure of most vir genes were similar to those of tumor-inducing plasmid pTiA6NC. In contrast, the spacers between vir genes were not conserved except for characteristic 6-bp sequences. Various mutations were introduced within the vir genes, and functions for several vir genes in the T-DNA transfer were deduced or estimated.
2. Transcription from the vir genes under the presence or absence of plant factors were analyzed by the Sl-mapping procedure, and it was found that (1) RNA start sites for each of vira and virg were different, depending on the conditions used, meaning the tandem presence of two promoters, which were constitutive and inducible, respectively; (2) one to four characteristic 6-bp sequences, phasing at ll-bp intervals, were present upstream all of the inducible promoters; (3) these 6-bp blocks were recognized by the VirG regulatory protein in vitro; (4) the phase of the 6-bp sequences was nearly opposite to that of the -35 and -10 regions of the promoter; and (5) based on these facts, we presented a model for transcriptional activation that VirG molecules cooperatively bind to DNA along one side by recognizing the 6-bp sequences, leading to the activation of the -35 region of promoter for RNA polymerase to interact with the DNA from the other side. 3. Plasmid vectors with a low-copy-number, which are useful for genetic analysis with Agrobacterium, were constructed by isolating mini-plasmids from pRiA4 and pTiB6S3.

Report

(4 results)
  • 1989 Annual Research Report   Final Research Report Summary
  • 1988 Annual Research Report
  • 1987 Annual Research Report
  • Research Products

    (33 results)

All Other

All Publications (33 results)

  • [Publications] R.Nishiguchi et al.: "Characterization and sequence determination of the replicator region in the hairy-root-inducing plasmid pRiA4b." Molecular and General Genetics. 206. 1-8 (1987)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T.Hirayama et al.: "Organization and characterization of the virCD genes from Agrobacterium rhizogenes." Molecular and General Genetics. 213. 229-237 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Y.Asada et al.: "Cloning and sequencing of a ligninase gene from a lignin-degrading basidiomycete,Phanerochaete chrysosporium." Applied Microbiology and Biotechnology. 29. 469-473 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] S.Tabata et al.: "Sequence determination and characterization of the replicator region in the tumor-inducing plasmid pTiB6S3." Journal of Bacteriology. 171. 1665-1672 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T.Aoyama et al.: "Putative start codon TTG for the regulatory protein VirG of the hairy-root-inducing plasmid pRiA4." Gene. 78. 173-178 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T.Aoyama et al.: "Signal structure for transcriptional activation in the upstream regions of virulence genes on the hairy-root-inducing plasmid A4." Nucleic Acids Research. 17. 8711-8725 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T.Hirayama&A.Oka: "The virE and virD3 genes are nonessential for induction of hairy roots on plants by Agrobacterium rhizogenes A4." Bulletin of the Institute for Chemical Research,Kyoto University(印刷中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T.Aoyama&A.oka: "A common mechanism of transcriptional activation by the three positive regulators,VirG,phoB,and OmpR." FEBS Letters(印刷中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] 日本微生物学協会編(分担): "微生物学辞典" 技報堂出版, 1405 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T.Aoyama et al.(分担): "Nucleic Acids,Symposium Series No.21" Oxford University Press,New York, 142 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] 平山隆志,岡穆宏(分担): "蛋白質・核酸・酵素" 共立出版,

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] R. Nishiguchi: "Characterization and sequence determination of the replicator region in the hairy-root-inducing plasmid pRiA4b." Mol. Gen. Genet. 206, 1-8 (1987).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T. Hirayama: "Organization and characterization of the virCD genes from Agrobacterium rhizogenes." Mol. Gen. Genet. 213, 229-237 (1988).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Y. Asada: "Cloning and sequencing of a ligninase gene from a lignin-degrading basidiomycete, Phanerochaete chrysosporium." Applied Microbiol. Biotechnol. 29, 469-473 (1988).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] S. Tabata: "Sequence determination and characterization of the replicator region in the tumor-inducing plasmid pTiB6S3." J. Bacteriol. 171, 1665-1672 (1989).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T. Aoyama: "Putative start codon TTG for the regulatory protein VirG of the hairy-root-inducing plasmid pRiA4." Gene 78, 173-178 (1989).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T. Aoyama: "Signal structure for transcriptional activation in the upstream regions of virulence genes on the hairy-root-inducing plasmid A4." Nucl. Acids Res. 17, 8711-8725 (1989).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T. Hirayama: "The virE and virD3 genes are nonessential for induction of hairy roots on plants by Agrobacterium rhizogenes A4." Bull. Inst. Chem. Res. Kyoto Univ.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T. Aoyama: "A common mechanism of transcriptional activation by the three positive regulators, VirG, Phob, and OmpR." FEBS Lett.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] S.Tabata: "Sequence determination and characterization of the replicator region in the tumor-inducing plasmid pTiB6S3." J.Bacteriol.171. 1665-1672 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] T.Aoyama: "Putative start codon TTG forthe regulatory protein virG of the hairy-root-inducing plasmid pRiA4." Gene. 78. 173-178 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] T.Aoyama: "Signal structure for transcriptional activation in the upstream regions of virulence genes on the hairy-root-inducing plasmid A4." Nucleic Acids Res.17. 8711-8725 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] T.Harayama: "The virE and virD3 genes are nonessential for induction of hairy roots on plants by Agrobactorium rhizogenes A4." Bull.Inst.Chem.Res.Kyoto Univ.(1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] T.Aoyama: "A common mechanism of transcriptional activation by the three positive regulators,VirG,PhoB and OmpR." FEBS Letters. (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] 日本微生物学協会編(分担): "微生物学辞典" 技報堂出版, 1405 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] 平山隆志: "蛋白質・核酸・酵素(特集号)トランスポゾンによる遺伝子のクロ-ニング" 共立出版, (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] R.Nishiguchi: Molecular and General Genetics. 206. 1-8 (1987)

    • Related Report
      1988 Annual Research Report
  • [Publications] T.Hirayma: Molecular and General Genetics. 213. 229-237 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] S.Tabata: Journal of Bacteriology. 171. (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] T.Aoyama: Gene. (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] T.Aoyama: Nucleic Acids Reserch.

    • Related Report
      1988 Annual Research Report
  • [Publications] R.Nishiguchi: Molecular and General Genetics. 206. 1-8 (1987)

    • Related Report
      1987 Annual Research Report
  • [Publications] T.Hirayama: Molecula and General Genetics.

    • Related Report
      1987 Annual Research Report

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Published: 1987-04-01   Modified: 2016-04-21  

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