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Investigations on electronic processes of biomolecular elements by Computational Chemistry

Research Project

Project/Area Number 63300014
Research Category

Grant-in-Aid for Co-operative Research (A)

Allocation TypeSingle-year Grants
Research Field 広領域
Research InstitutionKyushu Institute of Technology (1989)
Okazaki National Research Institutes (1988)

Principal Investigator

KASHIWAGI Hiroshi  Kyushu Institute of Technology, Faculty of Computer Science and Systems Engineering, Professor, 情報工学部, 教授 (10000853)

Co-Investigator(Kenkyū-buntansha) KAKITANI Toshiaki  Nagoya University, Faculty of Science, Associate Professor, 理学部, 助教授 (90027350)
HATANO Masahiro  Tohoku University, Chemical Research Institute of Non-Aqueous Solutions, Profess, 非水溶液化学研究所, 教授 (50006293)
IMAMURA Akira  Hiroshima University, Faculty of Science, Professor, 理学部, 教授 (70076991)
NISHIMOTO Kichisuke  Osaka City University, Faculty of Science, Professor, 理学部, 教授 (20046949)
OHNO Kimio  Hokkaido University, Faculty of science, Professor, 理学部, 教授 (40000731)
Project Period (FY) 1988 – 1989
Project Status Completed (Fiscal Year 1989)
Budget Amount *help
¥11,200,000 (Direct Cost: ¥11,200,000)
Fiscal Year 1989: ¥4,700,000 (Direct Cost: ¥4,700,000)
Fiscal Year 1988: ¥6,500,000 (Direct Cost: ¥6,500,000)
KeywordsBiomolecular element / Hemoprotein / Photosynthesis protein / Flavin enzyme / Molecular orbital calculation / Molecular dynamics calculation / Flash spectroscopy / Resonance Raman spectroscopy / SCF計算 / クロロフィル / フラビン / フラッシュ分光 / 共鳴ラマン分光 / 分子力場計算
Research Abstract

In this Co-operative Research,frontier researchers with different methods have gathered under the new keyword "biomolecular element". They made earnest discussions with no limitation of time in four symposia. Brilliant research products have been obtained. Some typical products will be presented within a short page.
SCF program: AMOS,MCSCF program: JASON,molecular graphics program: KORIN,etc.which are large-scale programs with about a hundred thousands steps have been completed. In order to elucidate the mechanism of the charge separation in photosynthetic proteins,for the first time in the world, we performed an ab initio MO calculation on chlorophyll dimer by the AMOS program. The electronic structure of heme-oxygen complexes was revealed by JASON and excitation energies of porphyrin ring was exactly calculated by the Cl method for the first time in the world.
We proposed a calculation method for polymer's wavefunctions by using uniform localized orbitals and a many-body theory with a state description-by resonance among mass interaction structures. Phospholipid LB films which are models of artificial neurons were made and their rhythmic phenomena were analyzed by numerical simulations. A model for ion selection in ion channels was proposed to elucidate the control of ion transmission.
A method of numerical simulation for electrostatic field and induced electricity and a method of molecular force field with dihedral angles were developed and coded to understand the electric characteristic and mechanical movement of proteins,respectively. Control factors for electron transfer speed between pigments in solvent were revealed by the Monte-Carlo simulation. In order to estimate water effects to proteinti the time scale and space scale of water fluctuation were examined by molecular dynamics calculations and its factors were investigated.

Report

(3 results)
  • 1989 Annual Research Report   Final Research Report Summary
  • 1988 Annual Research Report
  • Research Products

    (76 results)

All Other

All Publications (76 results)

  • [Publications] S.Yamamoto,U.Nagashima,T.Aoyama,H.Kashiwagi: "MCSCF Calculations with Large Basis Sets" J.Compt.Chem.9. 627-635 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] S.Yamamoto,H.Kashiwagi: "CASSCF Study on the Fe-O_2 Bond in Dioxygen Heme Complex" Chem.Phys.lett.161. 85-89 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] S.Sinkai,A.Kawase,T.Yamaguchi,O.Manabe,Y.Wada,F.Yoneda,Y.Ohta,and K.Nishimoto: "Coenzyme Models 47. Synthesis and Reactivies of Novel Flavinophanes and 5-Deazaflavinophanes:Correlation between Flavine Reactivity and Ring Strain" J.Am.Chem.Soc.111. 4928-4935 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] A.Imamura,K.Ye,M.Takeshita: "A Theoetical Study of the Ionized State of Polymers with the Localized Molecular Orbital Meyhod" Bull.Chem.Soc.Jpn.62. 979-984 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] H.Sotokawa,T.Shimizu,H.Furuya,Abu Jafar Md.Sadeque,M.Hatano,Y.Ohba,M.Iwizumi,Y.Fujii-Kuriyama: "Erectron Spin Resonance Studies of Wild-Type and Mutant Cytohrome p-450d:Effects of Mutations at Proximal,Aromatic and Distal Sites on g Values" Biochim.Biophys.Acta.1037. 122-128 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T.Kakitani and N.Mataga: "Effect of Freezing out Protein Vibrational Modes on Electron Transfer kinetics in bacterial Reaction Centers" Photosynthesis Resarch. 22. 187-193 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] 川村富士夫,柏木浩,他: "89'先端化学・技術開発年鑑" 技術出版, 630 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] M.Hatano Ed.: "Protein Structural Analysis,Folding and Design" Japan Scienfic Societies Press and Elsevier,Tokyo and Amsterdum, 320 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] S.Yamamoto, U.Nagashima, T.Aoyama, H.Kashiwagi: "MCSCF calculations with Large Basis Sets" J.Compt.Chem.9. 627-635 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] S.Yamamoto, H.Kashiwagi: "CASSCF Study on Fe-O_2 Bond in a Dioxygen Heme Complex" Chem.Phys.Lett., 161, 85-89, 1989.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] S.Shinkai, A.Kawase, T.Yamaguchi, O.Manabe, Y.Wada, F.Yonede, Y.Ohta, and K.Nishimoto: "Coenzyme, Models 47. Synthesis and Reactivity of Novel Flavinophanes and 5-Deazaflavinophanes: Correlation between Flavine Reactivity and Ring Strain" J.Am.Chem.Soc., 111, 4928-4935, 1989.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] A.Imamura, K.Ye, M.Takeshita: "A Theoretical Study of the Ionized State of Polymers Molecular Orbital Method." Bull.Chem.Soc.Jpn., 62, 979-984, 1989.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] H.Sotokawa, T.Shimizu, H.Furuya, Abu Jafar Md.Sadeque, M.Hatano, Y.Ohba, M.Iwaizumi, Y.Fujii-Kuriyama: "Electron Spin Resonance Studies of Wild-Type and Mutant Cytochrome p-450d:Effects of Mutations at Proximal, Aromatic and Distal Sites on g Values" Biochim.Biophys.Acta., 1037, 122-128, 1990.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] T.Kakitani and N.Mataga: "Effect of Freezing out Protein Vibrational Modes on Electron Transfer Kinetics in Bacterial Reaction Centers." Photosynthesis Research, 22, 187-193, 1989.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] F.Kawamura; H.Kashiwagi, et al.: '89 Yearbook for Development of Frontier Science and Technology. Gijutsu Shuppan, 630 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] M.hatano Ed.: Protein Structural Analysis, Folding and Design. Japan Scientific Societies Press and Elsevier, Tokyo and Amsterdum, 320 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] S.Yamamoto,U.Nagashima,T.Aoyama,H.Kashiwagi: "MCSCF Calculations with Large Basic Sets" J.Compt.Chem.9. 627-635 (1988)

    • Related Report
      1989 Annual Research Report
  • [Publications] S.Yamamoto.H.Kashiwagi: "CASSCF Study on the Fe-O_2 Bond in Dioxygen Heme Complex" Chem.Phys.lett.161. 85-89 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] S.Sinkai,A.Kawase,T.Yamaguchi,O.Manabe,Y.Wada,F.Yoneda,Y.Ohta and K.Nishimoto: "Coenzyme Models 47.Synthesis and Reactives of Novel Flabinophanes and 5-Deazaflavinophanes:Correlation between Flavine Reactivity and Ring Strain" J.Am.Chem.Soc.111. 4928-4935 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] A.Imamura,K.Ye,M.Takeshita: "A Theoretical Study of the lonized State of Polymers with the Localized Molecular Orbital Meyhod" Bull.Chem.Soc.Jpn.62. 979-984 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] H.Sotokawa,T.Shimizu,H.Furuya,Abu Jafar Md.Sadeque,M.Hatano,Y.Ohba,M.Iwizumi,Y.Fujii-Kuriyama: "Erectron Spin Resonance Studies of Wild-Type and Mutant Cytohrome p-450d:Effects of Mutations at Proximal,Aromatic and Distal Sites on g Values" Biochim.Biophys.Acta.1037. 122-128 (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] T.Kakitani and N.Mataga: "Effect of Freezing out Protein Vibrational Modes on Electron Transfer Kinestics in bacterial Reaction Centers" Photosynthesis Resarch. 22. 187-193 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] 川村富士夫、柏木浩、他: "89'先端科学・技術開発年鑑" 技術出版, 630

    • Related Report
      1989 Annual Research Report
  • [Publications] M.Hatano Ed.: "Protein Structural Analysis,Folding and Design" Japan Scientific Societies Press and Elsevier,Tokyo and Amsterdum, 320 (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] 柏木浩: J.Chem.Phys.88. 303-312 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] 柏木浩: Chem.Phys.LEtt.145. 111-116 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] 柏木浩: J.Comt.Chem.9. 627-635 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] 大野公男: Coll.Czech.Chom.Comon.(1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] 広田文彦: J.Mol.Struct.(1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] 福留秀雄: Progress of Theoretical Physics. 79. 61-76 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] K.Miyakawa.;Y.Kaizu.;H.Kobayashi.: J.Chem.Soc.,Faraday Trans.1.84. 1517-1529 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] H.Matsuzawa.;Y.Ohashi.;Y.Kaizu.;H.Kobayashi.: Inorg.Chem.27. 2981-2985 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] H.Kobayashi.;Y.Kaizu.;H.Kimura.;H.Matsuzawa.;H.Adachi.: Mol.Phys.64. 1009-1030 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] M.Asano.;Y.Kaizu.;H.Kobayashi.: J.Chem.Phys.89. 6567-6576 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] O.Ohno.;N.Ishikawa.;H.Matsuzawa.Y.Kaizu.;H.Kobayashi.: J.Phys.Chem. (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] 神沼二真: 第25回情報科学技術研究集会発表論文集. (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] T.Ogura.;T.Kitagawa.: Review of Scientific Instruments. 59. 1316-1320 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] K.Kamogawa.;T.Funii.;T.Kitagawa.: Applied Spectroscopy. 42. 248-254 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] A.L.Verma.;K.Kimura.;A.Nakamura.;T.Yagi.;H.Inokuchi.;T.Kitagawa.: Journal of American Chemical Society. 110. 6617-6623 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] J.De Groot.;R.E.Hester.;S.Kaminaka.;T.Kitagawa.: Journal of P-ysical Chemistry. 92. 2044-2048 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] T.Fujii.;K.Kamogawa.;T.Kitagawa.: Chemical Physics Letters. 148. 17-20 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] N.Kitajima.;T.Koda.;S.Hashimoto.;T.Kitagawa.;Y.Morooka.: Journal of Chemical Society,Chemical Communications. 151-152 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Yuriko Aoki.;Akira Imamura.;Takae Sasaki.: Buii.Chem.Soc.Jpn. 61. 1063-1070 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Ko Saito.;Koso Makishita.;Terumitsu Kakumoto.;Takaharu Sasaki.;Akira Imamura.: J.Phys.Chem.92. 4371-4374 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Akira Imamura.;Seiji Tani.;Katsuya Kanda.: J.Theoret.Biol.135. 215-218 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Yuriko Aoki.;Akira Imamura.;Keiji Morokuma.: J.Chem.Phys.89. 1147-1152 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Hiroyuki Toh.;Akira Imamura.;Katsuya Kanda.: J.Theoret.Biol.136. 79-85 (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] 今村詮、谷誠治、勝博幸: 生物物理. 28. 260-264 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Y.Ogoma.;A.Nakamura.;T.Miwa.;T.Fujii.;Y.Kondo.;T.Shimizu.;M.Hatano.: Polymer Commun.28. 318-320 (1987)

    • Related Report
      1988 Annual Research Report
  • [Publications] H.Sotokawa.;A.Tajiri.N.Morita.;C.Kabuto.;M.Hatano.;T.Asao.: Tetrahedron Lett.28. 5873-5876 (1987)

    • Related Report
      1988 Annual Research Report
  • [Publications] A.Tajiri.;H.Sotokawa.;N.Morita.;C.Kabuto.;M.Hatano.;T.Asao.: Tetrahedron Lett.28. 6465-6468 (1987)

    • Related Report
      1988 Annual Research Report
  • [Publications] N.Morita.;T.Asao.;H.Sotokawa.;M.Hatano.;A.Tajiri.: J.Organomet.Chem.339. C1-C6 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] H.Konami.;M.Hatano.: Chem.Lett.1988. 1359-1362 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] A.J.Md.Sadeque.;T.Shimizu.;M.Hatano.: Inorg.Chim.Acts. 151. 49-54 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] K.Fujio.;M.Hatano.: Inorg.Chim.Acta. 127. L21-L26 (1987)

    • Related Report
      1988 Annual Research Report
  • [Publications] J.Sohma.;M.Tabata.;F.Ebisawa.;M.Hatano.: Polymer Degradation and Stability. 17. 5-12 (1987)

    • Related Report
      1988 Annual Research Report
  • [Publications] T.Simizu.;M.Hatano.: Inorg.Chim.Acta. 152. 257-260 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] T.Shimizu.K.Hirano.M.Takahashi.;M.Hatano.;Y.Fujii-Kuriyama.: Biochemstry. 27. 4138-4141 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Y.Ogoma.;T.Shimizu.;M.Hatano.;T.Fujii.A.Hachimori.;Y.Kondo.: Inorganic chem.27. 1853-1855 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Y.Ogoma.;H.Kobayashi.K.Bando.T.Fujii.;Y.Kondo.;A.Hachimori.K.Ohki.;M.Hatano.: Polymer Commun.29. 149-151 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] T.Muraoka.;T.Nozawa.;M.Hatano.: Inorg.Chim.Acta. 154. 45-49 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] T.Muraoka.;T.Nozawa.;M.Hatano.: Inorg.Chim.Acta. 154. 59-62 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] A.J.Md.Sadeque.;T.Shimizu.;M.Hatano.: Inorg.Chim.Acta. 153. 161-164 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] T.Shimizu.;A.J.Md.Sadeque.;M,Hatano.;Y.Fujii-Kuri-Yama.: Biochim. Biophys.Acta. (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] M.Ohta.;T.Nozawa.;M.Hatano.;H.Hayashi.;M.Tasumi.;K.Shimada.: Biochim.Biophys.Acta. (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] H.Furuya.;T.Shimizu.;K.Hirano.;M.Hatano.;Y.Fujii-Kuriyama.;R.Raag.;T.L.Poulos.: Biochemistry. (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] 吉川研一: Biophysical Chemistry. 29. 293-299 (1988)

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      1988 Annual Research Report
  • [Publications] 吉川研一: Langmuir. 4. 759-762 (1988)

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      1988 Annual Research Report
  • [Publications] 吉川研一: Chem.Phys.Lett. 146. 444-448 (1988)

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      1988 Annual Research Report
  • [Publications] 吉川研一: 現代化学. 4月号. 56-61 (1988)

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      1988 Annual Research Report
  • [Publications] 吉川研一: 表面. 11月号. 786-795 (1988)

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      1988 Annual Research Report
  • [Publications] 吉川研一: 化学. 12月号. 781 (1988)

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      1988 Annual Research Report
  • [Publications] 柏木浩: "R&Dコンピューティング要覧" サイエンス・フォーラム, (1988)

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      1988 Annual Research Report
  • [Publications] 柏木浩: "'89先端科学技術開発年鑑" 技術出版, (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] 広田文彦: "Sterochemical Apllication of Gas Electron Diffractions "Information on Electron Distribution from Electron Scatlering"" VCH Publishers, 80-115 (1988)

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      1988 Annual Research Report
  • [Publications] 北川禎三: "ラマン分光学入門" 化学同人, 1-203 (1988)

    • Related Report
      1988 Annual Research Report

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Published: 1988-04-01   Modified: 2016-04-21  

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