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Structures and Properties of Metal Binding Sites in Biological and Model Systems

Research Project

Project/Area Number 63430009
Research Category

Grant-in-Aid for General Scientific Research (A)

Allocation TypeSingle-year Grants
Research Field 無機・錯塩・放射化学
Research InstitutionNagoya University

Principal Investigator

YAMAUCHI Osamu  Nagoya University, School of Science, Professor, 理学部, 教授 (70029643)

Co-Investigator(Kenkyū-buntansha) SHINOHARA Atsushi  Nagoya University, School of Science, Research Associate, 理学部, 助手 (60183050)
ODANI Akiri  Nagoya University, School of Science, Research Associate, 理学部, 助手 (60143913)
TAKANI Masako  Kanazawa University, Faculty of Pharmaceutical Sciences, Assistant Professor, 薬学部, 構師 (40019667)
SANO Mitsuru  Nagoya University, College of General Education, Associate Professor, 教養部, 助教授 (90144097)
FURUKAWA Michiaki  Nagoya University, School of Science, Associate Professor, 理学部, 助教授 (10011537)
Project Period (FY) 1988 – 1989
Project Status Completed (Fiscal Year 1989)
Budget Amount *help
¥21,500,000 (Direct Cost: ¥21,500,000)
Fiscal Year 1989: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 1988: ¥20,500,000 (Direct Cost: ¥20,500,000)
KeywordsBiological metal ions / Mixed ligand copper(II) complexes / Pterin-containing copper(II) complexes / Aromatic ring stacking / Intermolecular association / Solution equilibria of complexes / Copper(II) complex of folic acid / Electrostatic ligand-ligand interactions / 静電的相互作用 / 配位子間相互作用 / 銅(II)ープテリン錯体 / インド-ル環の金属結合能 / パラジウム(II)ーインド-ル錯体 / プテリン補酵素結合モデル
Research Abstract

With a view to obtaining basic information regarding the metal complex in biological systems, we investigated the modes of biomoleculemetal ion interactions and the structures of the resulting complexes.
1. Aromatic Ring Stacking and Electrostatic Interactions between Coordinated Ligands. X-ray crystal structure analysis of ternary copper(II) complexes containing histamine and phenylalanine or tyrosine disclosed the aromatic ring stacking between coordinated imidazole and the side chain aromatic ring of the amino acids. Aromatic ring stacking has also been detected between uncoordinated indole and copper(II)-coordinated 1,10-phenanthroline. Intramolecular electrostatic ligand-ligand interactions in ternary copper(II) complexes of ligands with oppositely charged side chains were concluded for the complexes in solution on the basis of the intermolecular interactions established in the solid state between the carboxylate group and the guanidinium group from two adjacent molecules.
2. Coordi … More nation Structures and Properties of Copper(II)-Pterin Complexes. Folic acid, a pterin cofactor, has been found to react with copper(II)-2,2'-bipyridine to give a ternary complex containing 2,2'-bipyridine and pterin-6-carboxylate as a result of the Cu(II)-catalyzed oxidative cleavage of the side chain of folic acid. The structure of the complex revealed by X-ray analysis shows that the pterin ring coordinates to copper(II) through the N(5) atom with its ring perpendicular to the coordination plane. An equatorial position is occupied by a water molecule, which was found to be easily displaced by imidazole to give a quaternary complex. This suggests that the position may be the substrate binding site.
3. Palladium(II)-Indole and Platinum(II) Complex-Indole Interactions. Tetrachloropalladate(II) reacted with alkylindoles and indole-3-acetate to give complexes where the indole ring coordinates to palladium(II) through its nitrogen in the 3H-indole form. Platinum(II) complexes with coordinated aromatic diamines interacted with indole-3-acetate etc. to form adducts, whose stability constants and thermodynamic parameters showed that the adduct formation is mainly due to stacking between the coordinated aromatic diamine and the indole ring. Less

Report

(3 results)
  • 1989 Annual Research Report   Final Research Report Summary
  • 1988 Annual Research Report
  • Research Products

    (36 results)

All Other

All Publications (36 results)

  • [Publications] 山内脩: "生体構成成分を配位子とする金属錯体の構造と特性ーアミノ酸およびモノヌクレオチドが関与する分子間相互作用ー" 日本化学会誌. 1988. 369-382 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] 増田秀樹: "分子内芳香環スタッキング相互作用を有する三元系 銅(II)ージアミンーアミノ酸錯体の構造に関する研究" 日本化学会誌. 1988. 783-785 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Takamitsu Kohzuma: "Pteridin-Containing Ternary Copper(II)Complexes as Pterin Cofactor-Metal Binding Models.Structures,Solution Equilibria,and Redox Activities" Inorganic Chemistry. 27. 3854-3858 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Hidehi Masuda: "Structure of an L-Tyrosyl-L-histidine-Copper Complex Involving an Axial Copper(II)-Phenol OH Bonding.Implication for Substrate Binding at the Active Site of Tyrosinase" Inorganic Chemistry. 28. 624-625 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Takamitsu Kohzuma: "Structure and Properties of a Pterin-containing Teranry Copper(II)Complex,[Cu(bpy)(PC)(H_2O)]・3H_2O(bpy=2,2′-bipyridine;PC=pterin-6-carboxyl-ate).Implications for the Active Site Copper-Cofactor Bonding in Chrom-bacterium violaceum Phenylalanine Hydorxylase" Journal of the American Chemical Society. 111. 3431-3433 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Osamu Yamauchi: "Copper-Pterin Interactions in Biologically Relevant Model Systems" Journal of Inorganic Biochemistry. 36. 312 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Osamu Yamauchi: "Aromatic Ring Stacking in Ternary Copper(II)Complexes[Cu(histamine)(L-AA)(ClO_4)](AA=Phenylalaninate,Tyrosinate).Structural Evidence for Intramolecular Stacking Involving a Coordinated Imidazole Ring" Inorganic Chemistry. 28. 4066-4068 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Akira Odani: "Complex Formation Involving Phytic Acid-Ca^<2+>,Mg^<2+>,K^+ System(Phytin)Playing the Role of the Energy Storage of Biosyntheses from Plant Seeds" Journal of Pharmacobio-Dynamics(in press). 13. (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Helmut Sigel: "The Imidazole Group and Its Stacking Properties in Mixed Ligand Metal Ion Complexes" Comments on Inorganic Chemistry(in press). 8. (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Osamu Yamauchi: "Indole Nitrogen-Palladium(II)Bonding.Chemical and Structural Characterization of Palladium(II)Complexes of Alkylindoles and Intermediacy of 3H-Indole Ring" Inorganic Chemistry(in press). 29. (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Osamu Yamauchi: "Adduct Formation between Platinum DNA Intercalators and Mononucleotides through Noncovalent Interactions.Spectroscopic and Structural Studies" 発表予定.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Akira Odani: "Effects of Phosphorylation of Amino Acid Side Chains on the Formation of Ternary Copper(II)Complexes Intramolecular Electrostatic Ligand-Ligand Interactions between Phosphoester and Arginine or Lysine Side Groups" 発表予定.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Osamu Yamauchi and Akira Odani: "Structures and Properties of Metal-Biomolecule Complexes-Intermolecular Interactions Involving Amino Acids and Mononucleotides" Nippon Kagaku Kaishi. 1988. 369-382 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Hideki Masuda, Osamu Matsumoto, Akira Odani, and Osamu Yamauchi: "Study on the Structure of a Ternary Cu(II)-Diamine-Amino Acid Complex Involving Intramolecular Aromatic Ring Stacking Interactions" Nippon Kagaku Kaishi, 1988, 783-788(1988).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Takamitsu Kohzuma, Akira Odani, Yasuo Morita, Masako Takani, and Osamu Yamauchi: "Pteridine-Containing Ternary Copper(II) Complexes as Pterin Cofactor-Metal Binding Models. Structures, Solution Equilibria, and Redox Activities" Inorganic Chemistry, 27, 3854-3858(1988).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Hideki Masuda, Akira Odani, and Osamu Yamauchi: "Structure of an L-Tyrosyl-L-histidine-Copper Complex Involving an Axial Copper(II)-Phenol OH Bonding. Implication for Substrate binding at the Active Site Tyrosinase" Inorganic Chemistry, 28, 624-625(1989).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Takamitsu Kohzuma, Hideki Masuda, and Osamu Yamauchi: "Structure and Properties of a Pterin-Containing Ternary Copper(II) Complex, [Cu(bpy)(PC)(H_2O)]・3H_2O (bpy=2,2'-Bipyridine; PC=Pterin-6-carboxylate)・ Implications for the Active-Site Copper-Cofactor Bonding in Chromobacterium violaceum Phenylalanine Hydroxylase" Journal of the American Chemical Society, 111, 3431-3433(1989).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Osamu Yamauchi: "Copper-Pterin Interactions in Biologically Relevant Model Systems" Journal of Inorganic Biochemistry, 36, 312(1989).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Osamu Yamauchi, Akira Odani, Takamitsu Kohzuma, Hideki Masuda, Koshiro Toriumi, and Kazuo Saito: "Aromatic Ring Stacking in Ternary Copper(II) Complexes [Cu(histamine)(L-AA)(ClO_4)] (AA=Phenylalaninate, Tyrosinate)・ Structural Evidence for Intramolecular Stacking Involving a Coordinated Imidazole Ring" Inorganic Chemistry, 28, 4066-4068(1989).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Akira Odani, Hideki Hayashi, and Osamu Yamauchi: "Complex Formations Involving Phytic Acid-Ca^<2+>, Mg^<2+>, K^+ Systems (Phytin) Playing the Role of the Energy Storage of Biosyntheses from Plant Seeds" Journal of Pharmacobio-Dynamics, 13, (1990).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Helmut Sigel, Roger Tribolet, and Osamu Yamauchi: "The Imidazole Group and Its Stacking Properties in Mixed Ligand Metal Ion Complexes" Comments on Inorganic Chemistry, 8, (1990).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Osamu Yamauchi, Masako Takani, Kazuo Toyoda, and Hideki Masuda: "Indole Nitrogen-Palladium(II) Bonding. Chemical and Structural Characterization of Palladium(II) Complexes of Alkylindoles and Intermediacy of 3H-Indole Ring" Inorganic Chemistry, 29, (1990).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Osamu Yamauchi, Akira Odani, Reiko Shimata, and Hideki Masuda: "Adduct Formation between Platinum DNA Intercalators and Mononucleotides through Noncovalent Interactions. Spectroscopic and Structural Studies"

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Akira Odani, Naoko Satake, Kotoyo Yokoyama, and Osamu Yamauchi: "Effects of Phosphorylation of Amino Acid Side Chanins on the Formation of Ternary Copper(II) Complexes. Intramolecular Electrostatic Ligand-Ligand Interactions between Phosphoester and Arginine or Lysine Side Groups"

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Osamu Yamauchi: "CopperーPterin Interactions in Biologically Relevant Model Systems" Journal of Inorganic Biochemistry. 36. 312 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] Osamu Yamauchi: "Aromatic Ring Stacking in Ternary Copper(II)Complexes [Cu(histamine)(LーAA)(ClO_4)](AA=Phenylalaninate,Tyrosinate).Structural Evidence for Intramolecular Stacking Involving a Coordinated Imidazole Ring" Inorganic Chemistry. 28. 4066-4068 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] Akira Odani: "Complex Formation Involving Phytic AcidーCa^<2+>,Mg^<2+>,K^+System(Phytin)Playing the Role of the Energy Storage of Biosyntheses from Plant Seeds" Journal of PharmacobioーDynamics. 13. (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] Helmut Sigel: "The Imidazole Group and Its Stacking Properties in Mixed Ligand Metal Ion Complexes" Comments on Inorganic Chemistry. 8. (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] Osamu Yamauchi: "Indole NitrogenーPalladium(II)Bonding.Chemical and Structural Characterization of Palladium(II)Complexes of Alkylindoles and Intermediacy of 3HーIndole Ring" Inorganic Chemistry. 29. (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] Osamu Yamauchi: "Adduct Formation between Platinum DNA Intercalators and Mononucleotides through Noncovalent Interactions.Spectroscopic and Structural Studies"

    • Related Report
      1989 Annual Research Report
  • [Publications] Akira Odani: "Effects of Phosphorylation of Amino Acid Side Chains on the Formation of Ternary Copper(II)Complexes.Intramolecular Electrostatic LigandーLigand Interactions between Phosphoester and Arginine or Lysine Side Groups"

    • Related Report
      1989 Annual Research Report
  • [Publications] 山内脩: 日本化学会誌. 1988. 369-382 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] 増田秀樹: 日本化学会誌. 1988. 783-788 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Takamitsu Kohzuma: Inorganic Chemistry. 27. 3854-3858 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Hideki Masuda: Inorganic Chemistry. 28. 624-625 (1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] Takamitsu Kohzuma: Journal of the American Chemical Society. 111. (1989)

    • Related Report
      1988 Annual Research Report

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Published: 1988-04-01   Modified: 2016-04-21  

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